Gene description for Lyn
Gene name Yamaguchi sarcoma viral (v-yes-1) oncogene homolog
Gene symbol Lyn
Other names/aliases AA407514
Hck-2
p53Lyn
p56Lyn
Species Mus musculus
 Database cross references - Lyn
ExoCarta ExoCarta_17096
Vesiclepedia VP_17096
Entrez Gene 17096
UniProt P25911  
 Lyn identified in sEVs derived from the following tissue/cell type
Macrophages 23658846    
Macrophages 23658846    
Macrophages 23658846    
Mast cells 17486113    
 Gene ontology annotations for Lyn
Molecular Function
    protein kinase activity GO:0004672 IDA
    protein tyrosine kinase activity GO:0004713 EXP
    protein tyrosine kinase activity GO:0004713 IDA
    protein tyrosine kinase activity GO:0004713 ISO
    protein tyrosine kinase activity GO:0004713 TAS
    non-membrane spanning protein tyrosine kinase activity GO:0004715 IBA
    non-membrane spanning protein tyrosine kinase activity GO:0004715 IMP
    non-membrane spanning protein tyrosine kinase activity GO:0004715 ISO
    signaling receptor binding GO:0005102 IBA
    signaling receptor binding GO:0005102 ISO
    erythropoietin receptor binding GO:0005128 TAS
    platelet-derived growth factor receptor binding GO:0005161 IEA
    platelet-derived growth factor receptor binding GO:0005161 ISO
    integrin binding GO:0005178 IEA
    integrin binding GO:0005178 ISO
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    SH3 domain binding GO:0017124 IPI
    enzyme binding GO:0019899 ISO
    ubiquitin protein ligase binding GO:0031625 IEA
    ubiquitin protein ligase binding GO:0031625 ISO
    histone H3Y41 kinase activity GO:0035401 IEA
    gamma-tubulin binding GO:0043015 IEA
    gamma-tubulin binding GO:0043015 ISO
    glycosphingolipid binding GO:0043208 IEA
    glycosphingolipid binding GO:0043208 ISO
    transmembrane transporter binding GO:0044325 IEA
    transmembrane transporter binding GO:0044325 ISO
    protein-containing complex binding GO:0044877 IPI
    protein-containing complex binding GO:0044877 ISO
    ephrin receptor binding GO:0046875 IEA
    ephrin receptor binding GO:0046875 ISO
    phosphoprotein binding GO:0051219 IEA
    phosphoprotein binding GO:0051219 ISO
    scaffold protein binding GO:0097110 IEA
    scaffold protein binding GO:0097110 ISO
    phosphorylation-dependent protein binding GO:0140031 IEA
    phosphorylation-dependent protein binding GO:0140031 ISO
    histone H2AXY142 kinase activity GO:0140801 IEA
    phosphatidylinositol 3-kinase activator activity GO:0141038 IMP
Biological Process
    DNA damage checkpoint signaling GO:0000077 IEA
    DNA damage checkpoint signaling GO:0000077 ISO
    cell morphogenesis GO:0000902 IGI
    B cell homeostasis GO:0001782 IMP
    regulation of cytokine production GO:0001817 IMP
    negative regulation of protein phosphorylation GO:0001933 IMP
    positive regulation of protein phosphorylation GO:0001934 ISO
    hematopoietic progenitor cell differentiation GO:0002244 IEA
    hematopoietic progenitor cell differentiation GO:0002244 ISO
    adaptive immune response GO:0002250 IEA
    Fc receptor mediated stimulatory signaling pathway GO:0002431 IBA
    Fc receptor mediated stimulatory signaling pathway GO:0002431 IMP
    tolerance induction to self antigen GO:0002513 IBA
    tolerance induction to self antigen GO:0002513 IMP
    histamine secretion by mast cell GO:0002553 IEA
    histamine secretion by mast cell GO:0002553 ISO
    platelet degranulation GO:0002576 IMP
    negative regulation of myeloid leukocyte differentiation GO:0002762 IMP
    immune response-regulating cell surface receptor signaling pathway GO:0002768 IMP
    Fc receptor mediated inhibitory signaling pathway GO:0002774 IMP
    regulation of B cell apoptotic process GO:0002902 IMP
    chromatin remodeling GO:0006338 IEA
    protein phosphorylation GO:0006468 ISO
    autophagy GO:0006914 IGI
    autophagy GO:0006914 IMP
    DNA damage response GO:0006974 IBA
    DNA damage response GO:0006974 ISO
    response to sterol depletion GO:0006991 IEA
    cell surface receptor protein tyrosine kinase signaling pathway GO:0007169 IBA
    cell surface receptor protein tyrosine kinase signaling pathway GO:0007169 IEA
    cell surface receptor protein tyrosine kinase signaling pathway GO:0007169 ISO
    positive regulation of cell population proliferation GO:0008284 IMP
    negative regulation of cell population proliferation GO:0008285 IMP
    negative regulation of cell population proliferation GO:0008285 ISO
    response to xenobiotic stimulus GO:0009410 IEA
    response to toxic substance GO:0009636 IEA
    response to hormone GO:0009725 IDA
    response to carbohydrate GO:0009743 IEA
    positive regulation of neuron projection development GO:0010976 IEA
    positive regulation of neuron projection development GO:0010976 ISO
    oligodendrocyte development GO:0014003 IEA
    response to organic cyclic compound GO:0014070 IEA
    fatty acid transport GO:0015908 IEA
    fatty acid transport GO:0015908 ISO
    peptidyl-tyrosine phosphorylation GO:0018108 IDA
    peptidyl-tyrosine phosphorylation GO:0018108 IDA
    peptidyl-tyrosine phosphorylation GO:0018108 IMP
    peptidyl-tyrosine phosphorylation GO:0018108 ISO
    hemopoiesis GO:0030097 IMP
    erythrocyte differentiation GO:0030218 IMP
    eosinophil differentiation GO:0030222 IEA
    eosinophil differentiation GO:0030222 ISO
    positive regulation of cell migration GO:0030335 IMP
    negative regulation of B cell proliferation GO:0030889 IMP
    neuron projection development GO:0031175 IBA
    neuron projection development GO:0031175 IMP
    lipopolysaccharide-mediated signaling pathway GO:0031663 IMP
    response to insulin GO:0032868 IEA
    regulation of mast cell activation GO:0033003 IMP
    regulation of cell adhesion mediated by integrin GO:0033628 IEA
    regulation of cell adhesion mediated by integrin GO:0033628 ISO
    negative regulation of toll-like receptor 2 signaling pathway GO:0034136 IMP
    toll-like receptor 4 signaling pathway GO:0034142 IMP
    negative regulation of toll-like receptor 4 signaling pathway GO:0034144 IMP
    cellular response to heat GO:0034605 IEA
    intracellular signal transduction GO:0035556 IDA
    interleukin-5-mediated signaling pathway GO:0038043 IEA
    interleukin-5-mediated signaling pathway GO:0038043 ISO
    C-X-C chemokine receptor CXCR4 signaling pathway GO:0038159 IEA
    C-X-C chemokine receptor CXCR4 signaling pathway GO:0038159 ISO
    positive regulation of phosphorylation GO:0042327 IEA
    positive regulation of phosphorylation GO:0042327 ISO
    hemoglobin biosynthetic process GO:0042541 TAS
    response to amino acid GO:0043200 IEA
    regulation of mast cell degranulation GO:0043304 IMP
    negative regulation of MAP kinase activity GO:0043407 IMP
    positive regulation of MAPK cascade GO:0043410 IEA
    positive regulation of MAPK cascade GO:0043410 ISO
    innate immune response GO:0045087 IEA
    regulation of erythrocyte differentiation GO:0045646 IMP
    protein autophosphorylation GO:0046777 IDA
    protein autophosphorylation GO:0046777 IDA
    protein autophosphorylation GO:0046777 ISO
    protein autophosphorylation GO:0046777 TAS
    response to axon injury GO:0048678 IEA
    regulation of inflammatory response GO:0050727 IMP
    B cell receptor signaling pathway GO:0050853 IDA
    B cell receptor signaling pathway GO:0050853 IGI
    regulation of B cell receptor signaling pathway GO:0050855 IBA
    regulation of B cell receptor signaling pathway GO:0050855 IMP
    regulation of release of sequestered calcium ion into cytosol GO:0051279 IGI
    regulation of release of sequestered calcium ion into cytosol GO:0051279 ISO
    positive regulation of glial cell proliferation GO:0060252 IEA
    positive regulation of glial cell proliferation GO:0060252 ISO
    positive regulation of Fc receptor mediated stimulatory signaling pathway GO:0060369 IEA
    positive regulation of Fc receptor mediated stimulatory signaling pathway GO:0060369 ISO
    regulation of ERK1 and ERK2 cascade GO:0070372 IMP
    negative regulation of ERK1 and ERK2 cascade GO:0070373 IMP
    positive regulation of oligodendrocyte progenitor proliferation GO:0070447 IEA
    positive regulation of oligodendrocyte progenitor proliferation GO:0070447 ISO
    negative regulation of mast cell proliferation GO:0070667 IMP
    positive regulation of mast cell proliferation GO:0070668 IEA
    positive regulation of mast cell proliferation GO:0070668 ISO
    cellular response to retinoic acid GO:0071300 IEA
    cellular response to retinoic acid GO:0071300 ISO
    regulation of monocyte chemotaxis GO:0090025 IEA
    regulation of monocyte chemotaxis GO:0090025 ISO
    regulation of platelet aggregation GO:0090330 IMP
    dendritic cell differentiation GO:0097028 IBA
    dendritic cell differentiation GO:0097028 IMP
    neuroinflammatory response GO:0150076 IGI
    negative regulation of intracellular signal transduction GO:1902532 IMP
    positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process GO:1902961 ISO
    positive regulation of dendritic cell apoptotic process GO:2000670 IMP
Subcellular Localization
    nucleus GO:0005634 IDA
    nucleus GO:0005634 ISO
    cytoplasm GO:0005737 IDA
    Golgi apparatus GO:0005794 IEA
    Golgi apparatus GO:0005794 ISO
    cytosol GO:0005829 TAS
    plasma membrane GO:0005886 IBA
    plasma membrane GO:0005886 IDA
    plasma membrane GO:0005886 ISO
    plasma membrane GO:0005886 ISO
    adherens junction GO:0005912 IEA
    adherens junction GO:0005912 ISO
    cytoplasmic side of plasma membrane GO:0009898 IEA
    cytoplasmic side of plasma membrane GO:0009898 ISO
    mitochondrial crista GO:0030061 IEA
    mitochondrial crista GO:0030061 ISO
    mitochondrial membrane GO:0031966 ISO
    protein-containing complex GO:0032991 IDA
    integrin alpha2-beta1 complex GO:0034666 IEA
    integrin alpha2-beta1 complex GO:0034666 ISO
    intracellular membrane-bounded organelle GO:0043231 ISO
    membrane raft GO:0045121 IDA
    membrane raft GO:0045121 ISO
    perinuclear region of cytoplasm GO:0048471 IEA
    perinuclear region of cytoplasm GO:0048471 ISO
    glutamatergic synapse GO:0098978 IEA
    glutamatergic synapse GO:0098978 ISO
    postsynaptic specialization, intracellular component GO:0099091 IEA
    postsynaptic specialization, intracellular component GO:0099091 ISO
 Experiment description of studies that identified Lyn in sEVs
1
Experiment ID 214
MISEV standards
EM
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23658846    
Organism Mus musculus
Experiment description Immunomodulatory impact of leishmania-induced macrophage exosomes: a comparative proteomic and functional analysis.
Authors "Hassani K, Olivier M."
Journal name PLoS Negl Trop Dis
Publication year 2013
Sample Macrophages
Sample name Leishmania-infected-Macrophage (J774A.1)
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Filtration
Protease inhibitors
Sucrose density gradient
Filtration
Ultracentrifugation
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 215
MISEV standards
EM
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23658846    
Organism Mus musculus
Experiment description Immunomodulatory impact of leishmania-induced macrophage exosomes: a comparative proteomic and functional analysis.
Authors "Hassani K, Olivier M."
Journal name PLoS Negl Trop Dis
Publication year 2013
Sample Macrophages
Sample name LPS-treated-Macrophage (J774A.1)
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Filtration
Protease inhibitors
Sucrose density gradient
Filtration
Ultracentrifugation
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
3
Experiment ID 216
MISEV standards
EM
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23658846    
Organism Mus musculus
Experiment description Immunomodulatory impact of leishmania-induced macrophage exosomes: a comparative proteomic and functional analysis.
Authors "Hassani K, Olivier M."
Journal name PLoS Negl Trop Dis
Publication year 2013
Sample Macrophages
Sample name Normal-Macrophage (J774A.1)
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Filtration
Protease inhibitors
Sucrose density gradient
Filtration
Ultracentrifugation
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
4
Experiment ID 15
MISEV standards
EM
Biophysical techniques
CD63
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 17486113    
Organism Mus musculus
Homo sapiens
Experiment description Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Authors "Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO"
Journal name NCB
Publication year 2007
Sample Mast cells
Sample name MC9
Bone marrow-derived mast cells
HMC-1
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.11-1.21 g/mL
Molecules identified in the study Protein
mRNA
miRNA
Methods used in the study Mass spectrometry [MALDI TOF]
Western blotting
Microarray
miRCURY LNA Array
 Protein-protein interactions for Lyn
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Dok1  
Affinity Capture-Western Mus musculus
2 Lrriq3  
Co-fractionation Mus musculus
3 Cd22  
Co-fractionation Mus musculus
4 Bank1  
Co-fractionation Mus musculus
5 Cd72  
Co-fractionation Mus musculus
6 1110004E09Rik  
Co-fractionation Mus musculus
7 Crebbp  
Affinity Capture-Western Mus musculus
Affinity Capture-Western Mus musculus
8 Itpr1  
Co-fractionation Mus musculus
9 Hdac3  
Affinity Capture-Western Mus musculus
10 Ms4a2  
Affinity Capture-Western Mus musculus
11 Atg16l1  
Affinity Capture-MS Mus musculus
12 Khdrbs1 20218
Biochemical Activity Mus musculus
13 Itga2  
Affinity Capture-Western Mus musculus
14 Cbl 12402
Affinity Capture-Western Mus musculus
Affinity Capture-Western Mus musculus
Affinity Capture-Western Mus musculus
15 Fancd2  
Affinity Capture-MS Mus musculus
16 Rnf180  
Co-fractionation Mus musculus
17 Pag1 94212
Two-hybrid Mus musculus
Affinity Capture-Western Mus musculus
Biochemical Activity Mus musculus
View the network image/svg+xml
 Pathways in which Lyn is involved
PathwayEvidenceSource
Adaptive Immune System IEA Reactome
Axon guidance IEA Reactome
C-type lectin receptors (CLRs) IEA Reactome
CD209 (DC-SIGN) signaling IEA Reactome
CD22 mediated BCR regulation IEA Reactome
CD28 co-stimulation IEA Reactome
Cell Cycle IEA Reactome
Cell Cycle, Mitotic IEA Reactome
Cell surface interactions at the vascular wall IEA Reactome
Costimulation by the CD28 family IEA Reactome
CTLA4 inhibitory signaling IEA Reactome
Cyclin D associated events in G1 IEA Reactome
Cytokine Signaling in Immune system IEA Reactome
Dectin-2 family IEA Reactome
Developmental Biology IEA Reactome
EPH-ephrin mediated repulsion of cells IEA Reactome
EPH-Ephrin signaling IEA Reactome
EPHA-mediated growth cone collapse IEA Reactome
EPHB-mediated forward signaling IEA Reactome
Erythropoietin activates Phosphoinositide-3-kinase (PI3K) IEA Reactome
Erythropoietin activates RAS IEA Reactome
Fc epsilon receptor (FCERI) signaling IEA Reactome
FCERI mediated Ca+2 mobilization IEA Reactome
FCERI mediated MAPK activation IEA Reactome
FCERI mediated NF-kB activation IEA Reactome
Fcgamma receptor (FCGR) dependent phagocytosis IEA Reactome
FCGR activation IEA Reactome
G1 Phase IEA Reactome
GPVI-mediated activation cascade IEA Reactome
Growth hormone receptor signaling IEA Reactome
Hemostasis IEA Reactome
Immune System IEA Reactome
Inactivation of CSF3 (G-CSF) signaling IEA Reactome
Innate Immune System IEA Reactome
Interleukin-3, Interleukin-5 and GM-CSF signaling IEA Reactome
Mitotic G1 phase and G1/S transition IEA Reactome
Nervous system development IEA Reactome
PECAM1 interactions IEA Reactome
Platelet activation, signaling and aggregation IEA Reactome
Platelet Adhesion to exposed collagen IEA Reactome
Regulation of KIT signaling IEA Reactome
Regulation of signaling by CBL IEA Reactome
Role of LAT2/NTAL/LAB on calcium mobilization IEA Reactome
Signal Transduction IEA Reactome
Signaling by CSF3 (G-CSF) IEA Reactome
Signaling by Erythropoietin IEA Reactome
Signaling by Interleukins IEA Reactome
Signaling by Receptor Tyrosine Kinases IEA Reactome
Signaling by SCF-KIT IEA Reactome
Signaling by the B Cell Receptor (BCR) IEA Reactome





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