Gene description for DDX58
Gene name DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
Gene symbol DDX58
Other names/aliases RIG-I
RIGI
RLR-1
SGMRT2
Species Homo sapiens
 Database cross references - DDX58
ExoCarta ExoCarta_23586
Entrez Gene 23586
HGNC 19102
MIM 609631
UniProt O95786  
 DDX58 identified in exosomes derived from the following tissue/cell type
Thymus 23844026    
 Gene ontology annotations for DDX58
Molecular Function
    ATP binding GO:0005524 IEA
    single-stranded RNA binding GO:0003727 IMP
    helicase activity GO:0004386 IEA
    double-stranded RNA binding GO:0003725 TAS
    protein binding GO:0005515 IPI
    identical protein binding GO:0042802 IPI
    zinc ion binding GO:0008270 IDA
    double-stranded DNA binding GO:0003690 IEA
Biological Process
    cytoplasmic pattern recognition receptor signaling pathway in response to virus GO:0039528 TAS
    positive regulation of interleukin-8 production GO:0032757 IDA
    response to exogenous dsRNA GO:0043330 IEA
    regulation of cell migration GO:0030334 IDA
    positive regulation of interleukin-6 production GO:0032755 IDA
    positive regulation of sequence-specific DNA binding transcription factor activity GO:0051091 IC
    positive regulation of granulocyte macrophage colony-stimulating factor production GO:0032725 IDA
    positive regulation of interferon-alpha production GO:0032727 IMP
    detection of virus GO:0009597 IDA
    positive regulation of transcription from RNA polymerase II promoter GO:0045944 IDA
    innate immune response GO:0045087 TAS
    negative regulation of type I interferon production GO:0032480 TAS
    positive regulation of transcription factor import into nucleus GO:0042993 IDA
    viral process GO:0016032 IEA
    metabolic process GO:0008152 IEA
    response to virus GO:0009615 TAS
    positive regulation of interferon-beta production GO:0032728 IMP
    RIG-I signaling pathway GO:0039529 IMP
    positive regulation of gene expression GO:0010628 IDA
    regulation of type III interferon production GO:0034344 TAS
    positive regulation of defense response to virus by host GO:0002230 IMP
Subcellular Localization
    ruffle membrane GO:0032587 IDA
    cytoplasm GO:0005737 IDA
    actin cytoskeleton GO:0015629 IDA
    cytosol GO:0005829 TAS
    bicellular tight junction GO:0005923 IDA
 Experiment description of studies that identified DDX58 in exosomes
1
Experiment ID 217
ISEV standards
EM
EV Biophysical techniques
TSG101
EV Cytosolic markers
CD81|CD9|CD63
EV Membrane markers
EV Negative markers
NTA
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O.
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for DDX58
  Protein Interactor ExoCarta ID Identification method PubMed Species
No interactions are found.



Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here