Gene description for Tnfrsf1a
Gene name tumor necrosis factor receptor superfamily, member 1a
Gene symbol Tnfrsf1a
Other names/aliases CD120a
FPF
TNF-R
TNF-R-I
TNF-R1
TNF-R55
TNF-alphaR1
TNFAR
TNFR60
TNFRI
TNFRp55
TNFalpha-R1
Tnfr-2
Tnfr1
p55
p55-R
Species Mus musculus
 Database cross references - Tnfrsf1a
ExoCarta ExoCarta_21937
Vesiclepedia VP_21937
Entrez Gene 21937
UniProt P25118  
 Tnfrsf1a identified in sEVs derived from the following tissue/cell type
Breast cancer cells 34112803    
Breast cancer cells 34112803    
Neural stem cells 25242146    
 Gene ontology annotations for Tnfrsf1a
Molecular Function
    protease binding GO:0002020 ISO
    tumor necrosis factor receptor activity GO:0005031 IBA
    tumor necrosis factor receptor activity GO:0005031 IDA
    tumor necrosis factor receptor activity GO:0005031 IGI
    tumor necrosis factor receptor activity GO:0005031 IMP
    tumor necrosis factor receptor activity GO:0005031 IPI
    tumor necrosis factor receptor activity GO:0005031 ISO
    tumor necrosis factor receptor activity GO:0005031 TAS
    protein binding GO:0005515 IPI
    signaling receptor activity GO:0038023 IDA
    tumor necrosis factor binding GO:0043120 IBA
    tumor necrosis factor binding GO:0043120 IEA
    tumor necrosis factor binding GO:0043120 ISO
    protein-containing complex binding GO:0044877 ISO
Biological Process
    aortic valve development GO:0003176 IGI
    pulmonary valve development GO:0003177 IGI
    negative regulation of extracellular matrix constituent secretion GO:0003332 IGI
    transcription by RNA polymerase II GO:0006366 IMP
    prostaglandin metabolic process GO:0006693 TAS
    defense response GO:0006952 IMP
    inflammatory response GO:0006954 IBA
    inflammatory response GO:0006954 IMP
    cell surface receptor signaling pathway GO:0007166 IMP
    cell surface receptor signaling pathway via JAK-STAT GO:0007259 IEA
    extrinsic apoptotic signaling pathway via death domain receptors GO:0008625 TAS
    intrinsic apoptotic signaling pathway in response to DNA damage GO:0008630 IMP
    negative regulation of cardiac muscle hypertrophy GO:0010614 IGI
    positive regulation of gene expression GO:0010628 ISO
    negative regulation of gene expression GO:0010629 ISO
    regulation of tumor necrosis factor-mediated signaling pathway GO:0010803 IGI
    cytokine-mediated signaling pathway GO:0019221 IMP
    negative regulation of interleukin-6 production GO:0032715 ISO
    positive regulation of tumor necrosis factor production GO:0032760 ISO
    tumor necrosis factor-mediated signaling pathway GO:0033209 IGI
    tumor necrosis factor-mediated signaling pathway GO:0033209 ISO
    tumor necrosis factor-mediated signaling pathway GO:0033209 TAS
    positive regulation of amide metabolic process GO:0034250 IGI
    positive regulation of protein import into nucleus GO:0042307 ISO
    positive regulation of tyrosine phosphorylation of STAT protein GO:0042531 ISO
    defense response to bacterium GO:0042742 IMP
    regulation of apoptotic process GO:0042981 ISO
    negative regulation of apoptotic process GO:0043066 ISO
    positive regulation of canonical NF-kappaB signal transduction GO:0043123 IMP
    positive regulation of neuron apoptotic process GO:0043525 ISO
    positive regulation of angiogenesis GO:0045766 ISO
    positive regulation of lipid metabolic process GO:0045834 IGI
    positive regulation of transcription by RNA polymerase II GO:0045944 IMP
    positive regulation of transcription by RNA polymerase II GO:0045944 ISO
    negative regulation of inflammatory response GO:0050728 IEA
    negative regulation of inflammatory response GO:0050728 ISO
    positive regulation of inflammatory response GO:0050729 IMP
    cellular response to mechanical stimulus GO:0071260 IEA
    protein localization to plasma membrane GO:0072659 IEA
    protein localization to plasma membrane GO:0072659 ISO
    positive regulation of execution phase of apoptosis GO:1900119 IGI
    positive regulation of execution phase of apoptosis GO:1900119 IMP
    positive regulation of apoptotic process involved in morphogenesis GO:1902339 IGI
    regulation of establishment of endothelial barrier GO:1903140 IEA
    regulation of establishment of endothelial barrier GO:1903140 ISO
    regulation of membrane lipid metabolic process GO:1905038 IGI
Subcellular Localization
    Golgi membrane GO:0000139 ISO
    Golgi membrane GO:0000139 ISS
    extracellular space GO:0005615 IEA
    extracellular space GO:0005615 ISO
    plasma membrane GO:0005886 IDA
    plasma membrane GO:0005886 ISO
    plasma membrane GO:0005886 TAS
    cell surface GO:0009986 IDA
    cell surface GO:0009986 ISO
    cell surface GO:0009986 ISO
    axon GO:0030424 ISO
    protein-containing complex GO:0032991 ISO
    receptor complex GO:0043235 IBA
    receptor complex GO:0043235 ISO
    membrane raft GO:0045121 IBA
    membrane raft GO:0045121 IDA
    membrane raft GO:0045121 ISO
 Experiment description of studies that identified Tnfrsf1a in sEVs
1
Experiment ID 520
MISEV standards
EM
Biophysical techniques
Tsg101|Cd9
Enriched markers
Golga2
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34112803    
Organism Mus musculus
Experiment description Tumor microenvironmental cytokines bound to cancer exosomes determine uptake by cytokine receptor-expressing cells and biodistribution
Authors "Lima LG, Ham S, Shin H, Chai EPZ, Lek ESH, Lobb RJ, Müller AF, Mathivanan S, Yeo B, Choi Y, Parker BS, Möller A. "
Journal name Nat Commun
Publication year 2021
Sample Breast cancer cells
Sample name EO771
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Centrifugal ultrafiltration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 521
MISEV standards
EM
Biophysical techniques
Tsg101|Cd9
Enriched markers
Golga2
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34112803    
Organism Mus musculus
Experiment description Tumor microenvironmental cytokines bound to cancer exosomes determine uptake by cytokine receptor-expressing cells and biodistribution
Authors "Lima LG, Ham S, Shin H, Chai EPZ, Lek ESH, Lobb RJ, Müller AF, Mathivanan S, Yeo B, Choi Y, Parker BS, Möller A. "
Journal name Nat Commun
Publication year 2021
Sample Breast cancer cells
Sample name PyMT
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Centrifugal ultrafiltration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 262
MISEV standards
EM
Biophysical techniques
Alix|TSG101|HSP70|HSP90|CD63|CD9|
Enriched markers
Negative markers
Y
Particle analysis
Identified molecule protein
Identification method Western blotting
PubMed ID 25242146    
Organism Mus musculus
Experiment description Extracellular Vesicles from Neural Stem Cells Transfer IFN-? via Ifngr1 to Activate Stat1 Signaling in Target Cells
Authors "Chiara Cossetti, Nunzio Iraci, Tim R. Mercer, Tommaso Leonardi, Emanuele Alpi, Denise Drago, Clara Alfaro-Cervello, Harpreet K. Saini, Matthew P. Davis, Julia Schaeffer, Beatriz Vega, Matilde Stefanini, CongJian Zhao, Werner Muller, Jose Manuel Garcia-Verdugo, Suresh Mathivanan, Angela Bachi, Anton J. Enright, John S. Mattick, Stefano Pluchino"
Journal name Molecular Cell
Publication year 2014
Sample Neural stem cells
Sample name NPCs
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.20 g/mL
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
Microarray
 Protein-protein interactions for Tnfrsf1a
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Map3k7  
Phenotypic Suppression Mus musculus
2 Ikbkg  
Affinity Capture-Western Mus musculus
3 Tmem173  
Proximity Label-MS Mus musculus
4 Ripk1  
Affinity Capture-Western Mus musculus
5 Chuk  
Affinity Capture-Western Mus musculus
6 Irak1  
Affinity Capture-Western Mus musculus
7 Usp7  
Affinity Capture-MS Mus musculus
8 TRADD 8717
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
9 Rnf31  
Affinity Capture-Western Mus musculus
Co-fractionation Mus musculus
10 Tnf  
Affinity Capture-Western Mus musculus
Affinity Capture-Western Mus musculus
11 Ikbkb 16150
Co-fractionation Mus musculus
Affinity Capture-Western Mus musculus
12 Atg12  
Positive Genetic Mus musculus
13 Rfk  
Co-fractionation Mus musculus
14 Tnfaip3  
Co-fractionation Mus musculus
15 FEM1B 10116
Affinity Capture-Western Homo sapiens
16 Bre  
Two-hybrid Mus musculus
Reconstituted Complex Mus musculus
Affinity Capture-Western Mus musculus
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