Gene description for REST
Gene name RE1-silencing transcription factor
Gene symbol REST
Other names/aliases NRSF
XBR
Species Homo sapiens
 Database cross references - REST
ExoCarta ExoCarta_5978
Vesiclepedia VP_5978
Entrez Gene 5978
HGNC 9966
MIM 600571
UniProt Q13127  
 REST identified in sEVs derived from the following tissue/cell type
Endothelial cells 26027894    
 Gene ontology annotations for REST
Molecular Function
    transcription cis-regulatory region binding GO:0000976 IBA
    transcription cis-regulatory region binding GO:0000976 IDA
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IDA
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IMP
    RNA polymerase II core promoter sequence-specific DNA binding GO:0000979 IEA
    DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001227 IBA
    DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001227 IDA
    DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001227 IMP
    chromatin binding GO:0003682 ISS
    DNA-binding transcription factor activity GO:0003700 IDA
    protein binding GO:0005515 IPI
    identical protein binding GO:0042802 ISS
    metal ion binding GO:0046872 IEA
    RNA polymerase II-specific DNA-binding transcription factor binding GO:0061629 IPI
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IDA
    negative regulation of transcription by RNA polymerase II GO:0000122 TAS
    regulation of alternative mRNA splicing, via spliceosome GO:0000381 ISS
    response to hypoxia GO:0001666 IDA
    hematopoietic progenitor cell differentiation GO:0002244 IEA
    response to ischemia GO:0002931 ISS
    chromatin remodeling GO:0006338 ISS
    regulation of DNA-templated transcription GO:0006355 IDA
    regulation of DNA-templated transcription GO:0006355 NAS
    negative regulation of cell population proliferation GO:0008285 IMP
    positive regulation of gene expression GO:0010628 ISS
    negative regulation of gene expression GO:0010629 IMP
    negative regulation of gene expression GO:0010629 ISS
    negative regulation of aldosterone biosynthetic process GO:0032348 IMP
    cellular response to stress GO:0033554 IEA
    somatic stem cell population maintenance GO:0035019 ISS
    positive regulation of apoptotic process GO:0043065 IMP
    positive regulation of programmed cell death GO:0043068 ISS
    negative regulation by host of viral transcription GO:0043922 IDA
    negative regulation of neuron differentiation GO:0045665 IBA
    negative regulation of neuron differentiation GO:0045665 IDA
    negative regulation of neuron differentiation GO:0045665 IMP
    positive regulation of neuron differentiation GO:0045666 ISS
    regulation of osteoblast differentiation GO:0045667 ISS
    negative regulation of DNA-templated transcription GO:0045892 IBA
    negative regulation of DNA-templated transcription GO:0045892 IDA
    negative regulation of DNA-templated transcription GO:0045892 IMP
    negative regulation of DNA-templated transcription GO:0045892 NAS
    positive regulation of DNA-templated transcription GO:0045893 IDA
    positive regulation of transcription by RNA polymerase II GO:0045944 IBA
    negative regulation of calcium ion-dependent exocytosis GO:0045955 ISS
    negative regulation of insulin secretion GO:0046676 IMP
    negative regulation of neurogenesis GO:0050768 ISS
    nervous system process GO:0050877 IMP
    neuromuscular process controlling balance GO:0050885 ISS
    detection of mechanical stimulus involved in sensory perception of sound GO:0050910 ISS
    auditory receptor cell stereocilium organization GO:0060088 ISS
    cardiac muscle cell myoblast differentiation GO:0060379 ISS
    cellular response to electrical stimulus GO:0071257 IMP
    cellular response to glucocorticoid stimulus GO:0071385 IDA
    cellular response to xenobiotic stimulus GO:0071466 IMP
    neuronal stem cell population maintenance GO:0097150 ISS
    modification of synaptic structure GO:0099563 ISS
    positive regulation of stem cell population maintenance GO:1902459 IDA
    negative regulation of miRNA transcription GO:1902894 IMP
    negative regulation of cortisol biosynthetic process GO:2000065 IMP
    negative regulation of dense core granule biogenesis GO:2000706 ISS
    negative regulation of mesenchymal stem cell differentiation GO:2000740 IMP
    negative regulation of amniotic stem cell differentiation GO:2000798 IMP
    positive regulation of cysteine-type endopeptidase activity GO:2001056 IMP
Subcellular Localization
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    nucleus GO:0005634 IMP
    nucleus GO:0005634 NAS
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    cytoplasm GO:0005737 IDA
    cytosol GO:0005829 IDA
    transcription repressor complex GO:0017053 IBA
    transcription repressor complex GO:0017053 IDA
 Experiment description of studies that identified REST in sEVs
1
Experiment ID 226
MISEV standards
EM
Biophysical techniques
GAPDH|CD9|FLOT1
Enriched markers
LMNA|H2AFX|ATP5A1|TOMM20
Negative markers
Particle analysis
Identified molecule mRNA
Identification method Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID 26027894    
Organism Homo sapiens
Experiment description "Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting"
Authors "Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar"
Journal name Journal of Extracellular Vesicles
Publication year 2015
Sample Endothelial cells
Sample name HMEC-1
Isolation/purification methods Differential ultracentrifugation
Sucrose density gradient
Flotation density 1.10 g/mL
Molecules identified in the study miRNA
Protein
snoRNA
lncRNA
yRNA
snRNA
mRNA
ncRNA
mtRNA
vtRNA
scaRNA
lincRNA
Methods used in the study Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
Western blotting
 Protein-protein interactions for REST
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Gtf2b  
Reconstituted Complex Mus musculus
2 GRIA2  
Affinity Capture-Western Homo sapiens
3 FBXW2  
Affinity Capture-Western Homo sapiens
4 HDAC4  
Affinity Capture-Western Homo sapiens
5 BTRC 8945
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
6 FBXW11  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
7 TERF2  
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
Affinity Capture-Western Homo sapiens
8 HDAC2 3066
Affinity Capture-MS Homo sapiens
9 FBXW5  
Affinity Capture-Western Homo sapiens
10 DVL2 1856
Affinity Capture-MS Homo sapiens
11 TP53 7157
Affinity Capture-MS Homo sapiens
12 SIN3A  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
13 SCYL1 57410
Affinity Capture-Western Homo sapiens
14 TBP  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
15 MAPK1 5594
Biochemical Activity Homo sapiens
16 Wiz  
Affinity Capture-MS Mus musculus
17 PIN1 5300
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
18 SP1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
19 SUB1 10923
Co-localization Homo sapiens
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
Reconstituted Complex Homo sapiens
20 SMARCE1 6605
Affinity Capture-Western Homo sapiens
21 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
22 UBC 7316
Affinity Capture-Western Homo sapiens
23 HDAC1 3065
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
24 EIF4A3 9775
Affinity Capture-MS Homo sapiens
25 GTF2B 2959
Reconstituted Complex Homo sapiens
26 CUL4B 8450
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
27 APEX1 328
Affinity Capture-RNA Homo sapiens
28 Sin3a  
Reconstituted Complex Mus musculus
29 FBXW4 6468
Affinity Capture-Western Homo sapiens
30 FASN 2194
Negative Genetic Homo sapiens
31 CDYL 9425
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
32 Hdac1 433759
Reconstituted Complex Mus musculus
33 SMARCA4 6597
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
34 NCOR1  
Affinity Capture-MS Homo sapiens
35 Tbp  
Reconstituted Complex Mus musculus
36 AURKA 6790
Reconstituted Complex Homo sapiens
37 Sin3b  
Affinity Capture-Western Mus musculus
Two-hybrid Mus musculus
Reconstituted Complex Mus musculus
Affinity Capture-Western Mus musculus
38 USP3 9960
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
Affinity Capture-Western Homo sapiens
39 PLK1 5347
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
40 FBXW7  
Affinity Capture-Western Homo sapiens
41 CSNK1E 1454
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
42 RNF2  
Affinity Capture-MS Homo sapiens
43 FBXW8 26259
Affinity Capture-Western Homo sapiens
44 TEX14  
Affinity Capture-Western Homo sapiens
45 CTDSP1 58190
Affinity Capture-Western Homo sapiens
46 HDAC5 10014
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
47 RCOR1  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
48 MDM2  
Affinity Capture-Western Homo sapiens
49 KDM5C  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
50 SIN3B  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
FRET Homo sapiens
51 SMARCC2 6601
Affinity Capture-Western Homo sapiens
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