Gene description for Rtn4
Gene name reticulon 4
Gene symbol Rtn4
Other names/aliases NI-250
Nogo
Nogo-A
Vp20
r
rat N
rat NogoA
Species Rattus norvegicus
 Database cross references - Rtn4
ExoCarta ExoCarta_83765
Vesiclepedia VP_83765
Entrez Gene 83765
UniProt Q9JK11  
 Rtn4 identified in sEVs derived from the following tissue/cell type
Adipocytes 25998041    
 Gene ontology annotations for Rtn4
Molecular Function
    protein binding GO:0005515 IPI
    ubiquitin protein ligase binding GO:0031625 IEA
    ubiquitin protein ligase binding GO:0031625 ISO
    protein homodimerization activity GO:0042803 ISO
    protein-containing complex binding GO:0044877 IDA
    cadherin binding GO:0045296 ISO
    metal ion binding GO:0046872 ISO
Biological Process
    blastocyst formation GO:0001825 IEA
    blastocyst formation GO:0001825 ISO
    leukocyte migration involved in inflammatory response GO:0002523 ISO
    leukocyte migration involved in inflammatory response GO:0002523 ISS
    endoplasmic reticulum organization GO:0007029 ISO
    nervous system development GO:0007399 ISO
    axonal fasciculation GO:0007413 IDA
    axonal fasciculation GO:0007413 IEA
    axonal fasciculation GO:0007413 ISO
    brain development GO:0007420 IBA
    positive regulation of epithelial cell migration GO:0010634 IEA
    positive regulation of epithelial cell migration GO:0010634 ISO
    negative regulation of neuron projection development GO:0010977 IDA
    response to activity GO:0014823 IEP
    olfactory nerve development GO:0021553 IEP
    cerebral cortex radial glia-guided migration GO:0021801 IEA
    cerebral cortex radial glia-guided migration GO:0021801 ISO
    cerebral cortex radial glia-guided migration GO:0021801 ISS
    central nervous system vasculogenesis GO:0022009 ISO
    central nervous system vasculogenesis GO:0022009 ISS
    neuron differentiation GO:0030182 IBA
    negative regulation of cell growth GO:0030308 ISO
    regulation of cell migration GO:0030334 ISO
    negative regulation of axon extension GO:0030517 IDA
    negative regulation of axon extension GO:0030517 IEA
    negative regulation of axon extension GO:0030517 ISO
    negative regulation of axon extension GO:0030517 ISS
    positive regulation of mammary gland epithelial cell proliferation GO:0033601 IEA
    positive regulation of mammary gland epithelial cell proliferation GO:0033601 ISO
    positive regulation of dopamine secretion GO:0033603 IMP
    positive regulation of toll-like receptor 9 signaling pathway GO:0034165 IEA
    positive regulation of toll-like receptor 9 signaling pathway GO:0034165 ISO
    positive regulation of toll-like receptor 9 signaling pathway GO:0034165 ISS
    positive regulation of Rac protein signal transduction GO:0035022 ISO
    positive regulation of Rac protein signal transduction GO:0035022 ISS
    cell migration involved in vasculogenesis GO:0035441 ISO
    cell migration involved in vasculogenesis GO:0035441 ISS
    negative regulation of neuron differentiation GO:0045665 IDA
    positive regulation of glial cell differentiation GO:0045687 IDA
    positive regulation of angiogenesis GO:0045766 ISO
    positive regulation of angiogenesis GO:0045766 ISS
    oligodendrocyte differentiation GO:0048709 IEP
    negative regulation of axonogenesis GO:0050771 IDA
    negative regulation of axonogenesis GO:0050771 IMP
    modulation of chemical synaptic transmission GO:0050804 IEA
    modulation of chemical synaptic transmission GO:0050804 ISO
    protein stabilization GO:0050821 IEA
    protein stabilization GO:0050821 ISO
    nuclear pore complex assembly GO:0051292 IEA
    nuclear pore complex assembly GO:0051292 ISO
    nuclear pore complex assembly GO:0051292 ISS
    positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 IEA
    positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 ISO
    regulation of nervous system development GO:0051960 ISO
    cardiac epithelial to mesenchymal transition GO:0060317 IEA
    cardiac epithelial to mesenchymal transition GO:0060317 ISO
    positive regulation of macrophage cytokine production GO:0060907 ISO
    positive regulation of macrophage cytokine production GO:0060907 ISS
    protein localization to lysosome GO:0061462 IEA
    protein localization to lysosome GO:0061462 ISO
    protein localization to lysosome GO:0061462 ISS
    negative regulation of neuron projection regeneration GO:0070571 IMP
    cellular response to hypoxia GO:0071456 ISO
    cellular response to hypoxia GO:0071456 ISS
    endoplasmic reticulum tubular network organization GO:0071786 ISO
    endoplasmic reticulum tubular network organization GO:0071786 ISS
    endoplasmic reticulum tubular network formation GO:0071787 IBA
    endoplasmic reticulum tubular network formation GO:0071787 IEA
    endoplasmic reticulum tubular network formation GO:0071787 ISO
    endoplasmic reticulum tubular network formation GO:0071787 ISS
    intracellular sphingolipid homeostasis GO:0090156 IEA
    intracellular sphingolipid homeostasis GO:0090156 ISO
    cell adhesion involved in sprouting angiogenesis GO:0120078 ISO
    cell adhesion involved in sprouting angiogenesis GO:0120078 ISS
    regulation of postsynapse assembly GO:0150052 IEA
    regulation of postsynapse assembly GO:0150052 ISO
    negative regulation of amyloid-beta formation GO:1902430 IEA
    negative regulation of amyloid-beta formation GO:1902430 ISO
    negative regulation of amyloid-beta formation GO:1902430 ISS
    positive regulation of neutrophil migration GO:1902624 ISO
    positive regulation of neutrophil migration GO:1902624 ISS
    positive regulation of macrophage migration GO:1905523 ISO
    positive regulation of macrophage migration GO:1905523 ISS
    positive regulation of protein localization to endoplasmic reticulum GO:1905552 IEA
    positive regulation of protein localization to endoplasmic reticulum GO:1905552 ISO
    positive regulation of ERBB3 signaling pathway GO:1905580 IEA
    positive regulation of ERBB3 signaling pathway GO:1905580 ISO
    positive regulation of artery morphogenesis GO:1905653 ISO
    positive regulation of artery morphogenesis GO:1905653 ISS
    endoplasmic reticulum tubular network membrane organization GO:1990809 IEA
    endoplasmic reticulum tubular network membrane organization GO:1990809 ISO
    endoplasmic reticulum tubular network membrane organization GO:1990809 ISS
    regulation of branching morphogenesis of a nerve GO:2000172 IDA
    regulation of branching morphogenesis of a nerve GO:2000172 IEA
    regulation of branching morphogenesis of a nerve GO:2000172 ISO
    positive regulation of hepatocyte proliferation GO:2000347 ISO
    positive regulation of hepatocyte proliferation GO:2000347 ISS
    negative regulation of vasculogenesis GO:2001213 ISO
    negative regulation of vasculogenesis GO:2001213 ISS
Subcellular Localization
    nuclear envelope GO:0005635 IEA
    nuclear envelope GO:0005635 ISO
    nuclear envelope GO:0005635 ISS
    endoplasmic reticulum GO:0005783 ISO
    endoplasmic reticulum membrane GO:0005789 IBA
    endoplasmic reticulum membrane GO:0005789 IDA
    endoplasmic reticulum membrane GO:0005789 IEA
    endoplasmic reticulum membrane GO:0005789 ISO
    plasma membrane GO:0005886 ISO
    postsynaptic density GO:0014069 IBA
    postsynaptic density GO:0014069 IEA
    postsynaptic density GO:0014069 ISO
    cell junction GO:0030054 ISO
    cell junction GO:0030054 ISS
    protein-containing complex GO:0032991 IDA
    cell projection GO:0042995 IEA
    cell projection GO:0042995 ISO
    neuron projection GO:0043005 IBA
    neuronal cell body GO:0043025 IDA
    neuronal cell body GO:0043025 IEA
    synapse GO:0045202 ISO
    synapse GO:0045202 ISS
    anchoring junction GO:0070161 IEA
    endoplasmic reticulum tubular network GO:0071782 ISO
    postsynapse GO:0098794 IDA
    postsynapse GO:0098794 ISO
    endoplasmic reticulum tubular network membrane GO:0098826 IEA
    endoplasmic reticulum tubular network membrane GO:0098826 ISO
    endoplasmic reticulum tubular network membrane GO:0098826 ISS
    postsynaptic density membrane GO:0098839 IDA
    glutamatergic synapse GO:0098978 IDA
    glutamatergic synapse GO:0098978 IEA
    glutamatergic synapse GO:0098978 ISO
 Experiment description of studies that identified Rtn4 in sEVs
1
Experiment ID 225
MISEV standards
✔ Biophysical techniques
✔ Enriched markers
✘ Negative markers
✔ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25998041    
Organism Rattus norvegicus
Experiment description Proteomic Analysis of Extracellular Vesicles Released by Adipocytes of Otsuka Long-Evans Tokushima Fatty (OLETF) Rats.
Authors "Lee JE, Moon PG, Lee IK, Baek MC"
Journal name Protein J
Publication year 2015
Sample Adipocytes
Sample name Adipocytes
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
 Protein-protein interactions for Rtn4
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Dao  
Affinity Capture-MS Rattus norvegicus
2 Rtn1  
Affinity Capture-Western Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
3 Fbxo21  
Affinity Capture-MS Rattus norvegicus
4 Itm2b 290364
Affinity Capture-MS Rattus norvegicus
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