Gene description for Tnfrsf1a
Gene name tumor necrosis factor receptor superfamily, member 1a
Gene symbol Tnfrsf1a
Other names/aliases CD120a
FPF
TNF-R
TNF-R-I
TNF-R1
TNF-R55
TNF-alphaR1
TNFAR
TNFR60
TNFRI
TNFRp55
TNFalpha-R1
Tnfr-2
Tnfr1
p55
p55-R
Species Mus musculus
 Database cross references - Tnfrsf1a
ExoCarta ExoCarta_21937
Vesiclepedia VP_21937
Entrez Gene 21937
UniProt P25118  
 Tnfrsf1a identified in sEVs derived from the following tissue/cell type
Breast cancer cells 34112803    
Breast cancer cells 34112803    
Neural stem cells 25242146    
 Gene ontology annotations for Tnfrsf1a
Molecular Function
    protease binding GO:0002020 ISO
    tumor necrosis factor receptor activity GO:0005031 IBA
    tumor necrosis factor receptor activity GO:0005031 IDA
    tumor necrosis factor receptor activity GO:0005031 IGI
    tumor necrosis factor receptor activity GO:0005031 IMP
    tumor necrosis factor receptor activity GO:0005031 IPI
    tumor necrosis factor receptor activity GO:0005031 ISO
    tumor necrosis factor receptor activity GO:0005031 TAS
    protein binding GO:0005515 IPI
    signaling receptor activity GO:0038023 IDA
    tumor necrosis factor binding GO:0043120 IBA
    tumor necrosis factor binding GO:0043120 IEA
    tumor necrosis factor binding GO:0043120 ISO
    protein-containing complex binding GO:0044877 ISO
Biological Process
    aortic valve development GO:0003176 IGI
    pulmonary valve development GO:0003177 IGI
    negative regulation of extracellular matrix constituent secretion GO:0003332 IGI
    transcription by RNA polymerase II GO:0006366 IMP
    prostaglandin metabolic process GO:0006693 TAS
    defense response GO:0006952 IMP
    inflammatory response GO:0006954 IBA
    inflammatory response GO:0006954 IMP
    cell surface receptor signaling pathway GO:0007166 IMP
    cell surface receptor signaling pathway via JAK-STAT GO:0007259 IEA
    extrinsic apoptotic signaling pathway via death domain receptors GO:0008625 TAS
    intrinsic apoptotic signaling pathway in response to DNA damage GO:0008630 IMP
    negative regulation of cardiac muscle hypertrophy GO:0010614 IGI
    positive regulation of gene expression GO:0010628 ISO
    negative regulation of gene expression GO:0010629 ISO
    regulation of tumor necrosis factor-mediated signaling pathway GO:0010803 IGI
    cytokine-mediated signaling pathway GO:0019221 IMP
    negative regulation of interleukin-6 production GO:0032715 ISO
    positive regulation of tumor necrosis factor production GO:0032760 ISO
    tumor necrosis factor-mediated signaling pathway GO:0033209 IGI
    tumor necrosis factor-mediated signaling pathway GO:0033209 ISO
    tumor necrosis factor-mediated signaling pathway GO:0033209 TAS
    positive regulation of amide metabolic process GO:0034250 IGI
    positive regulation of protein import into nucleus GO:0042307 ISO
    positive regulation of tyrosine phosphorylation of STAT protein GO:0042531 ISO
    defense response to bacterium GO:0042742 IMP
    regulation of apoptotic process GO:0042981 ISO
    negative regulation of apoptotic process GO:0043066 ISO
    positive regulation of canonical NF-kappaB signal transduction GO:0043123 IMP
    positive regulation of neuron apoptotic process GO:0043525 ISO
    positive regulation of angiogenesis GO:0045766 ISO
    positive regulation of lipid metabolic process GO:0045834 IGI
    positive regulation of transcription by RNA polymerase II GO:0045944 IMP
    positive regulation of transcription by RNA polymerase II GO:0045944 ISO
    negative regulation of inflammatory response GO:0050728 IEA
    negative regulation of inflammatory response GO:0050728 ISO
    positive regulation of inflammatory response GO:0050729 IMP
    cellular response to mechanical stimulus GO:0071260 IEA
    protein localization to plasma membrane GO:0072659 IEA
    protein localization to plasma membrane GO:0072659 ISO
    positive regulation of execution phase of apoptosis GO:1900119 IGI
    positive regulation of execution phase of apoptosis GO:1900119 IMP
    positive regulation of apoptotic process involved in morphogenesis GO:1902339 IGI
    regulation of establishment of endothelial barrier GO:1903140 IEA
    regulation of establishment of endothelial barrier GO:1903140 ISO
    regulation of membrane lipid metabolic process GO:1905038 IGI
Subcellular Localization
    Golgi membrane GO:0000139 ISO
    Golgi membrane GO:0000139 ISS
    extracellular space GO:0005615 IEA
    extracellular space GO:0005615 ISO
    plasma membrane GO:0005886 IDA
    plasma membrane GO:0005886 ISO
    plasma membrane GO:0005886 TAS
    cell surface GO:0009986 IDA
    cell surface GO:0009986 ISO
    cell surface GO:0009986 ISO
    axon GO:0030424 ISO
    protein-containing complex GO:0032991 ISO
    receptor complex GO:0043235 IBA
    receptor complex GO:0043235 ISO
    membrane raft GO:0045121 IBA
    membrane raft GO:0045121 IDA
    membrane raft GO:0045121 ISO
 Experiment description of studies that identified Tnfrsf1a in sEVs
1
Experiment ID 520
MISEV standards
✔ Biophysical techniques
✔ Enriched markers
✔ Negative markers
✔ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34112803    
Organism Mus musculus
Experiment description Tumor microenvironmental cytokines bound to cancer exosomes determine uptake by cytokine receptor-expressing cells and biodistribution
Authors "Lima LG, Ham S, Shin H, Chai EPZ, Lek ESH, Lobb RJ, Müller AF, Mathivanan S, Yeo B, Choi Y, Parker BS, Möller A. "
Journal name Nat Commun
Publication year 2021
Sample Breast cancer cells
Sample name EO771
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Centrifugal ultrafiltration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 521
MISEV standards
✔ Biophysical techniques
✔ Enriched markers
✔ Negative markers
✔ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34112803    
Organism Mus musculus
Experiment description Tumor microenvironmental cytokines bound to cancer exosomes determine uptake by cytokine receptor-expressing cells and biodistribution
Authors "Lima LG, Ham S, Shin H, Chai EPZ, Lek ESH, Lobb RJ, Müller AF, Mathivanan S, Yeo B, Choi Y, Parker BS, Möller A. "
Journal name Nat Commun
Publication year 2021
Sample Breast cancer cells
Sample name PyMT
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Centrifugal ultrafiltration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 262
MISEV standards
✔ Biophysical techniques
✔ Enriched markers
✘ Negative markers
✔ Particle analysis
Identified molecule protein
Identification method Western blotting
PubMed ID 25242146    
Organism Mus musculus
Experiment description Extracellular Vesicles from Neural Stem Cells Transfer IFN-? via Ifngr1 to Activate Stat1 Signaling in Target Cells
Authors "Chiara Cossetti, Nunzio Iraci, Tim R. Mercer, Tommaso Leonardi, Emanuele Alpi, Denise Drago, Clara Alfaro-Cervello, Harpreet K. Saini, Matthew P. Davis, Julia Schaeffer, Beatriz Vega, Matilde Stefanini, CongJian Zhao, Werner Muller, Jose Manuel Garcia-Verdugo, Suresh Mathivanan, Angela Bachi, Anton J. Enright, John S. Mattick, Stefano Pluchino"
Journal name Molecular Cell
Publication year 2014
Sample Neural stem cells
Sample name NPCs
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.20 g/mL
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
Microarray
 Protein-protein interactions for Tnfrsf1a
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Map3k7  
Phenotypic Suppression Mus musculus
2 Ikbkg  
Affinity Capture-Western Mus musculus
3 Tmem173  
Proximity Label-MS Mus musculus
4 Ripk1  
Affinity Capture-Western Mus musculus
5 Chuk  
Affinity Capture-Western Mus musculus
6 Irak1  
Affinity Capture-Western Mus musculus
7 Usp7  
Affinity Capture-MS Mus musculus
8 TRADD 8717
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
9 Rnf31  
Affinity Capture-Western Mus musculus
Co-fractionation Mus musculus
10 Tnf  
Affinity Capture-Western Mus musculus
Affinity Capture-Western Mus musculus
11 Ikbkb 16150
Co-fractionation Mus musculus
Affinity Capture-Western Mus musculus
12 Atg12  
Positive Genetic Mus musculus
13 Rfk  
Co-fractionation Mus musculus
14 Tnfaip3  
Co-fractionation Mus musculus
15 FEM1B 10116
Affinity Capture-Western Homo sapiens
16 Bre  
Two-hybrid Mus musculus
Reconstituted Complex Mus musculus
Affinity Capture-Western Mus musculus
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