Gene description for RPGRIP1L
Gene name RPGRIP1-like
Gene symbol RPGRIP1L
Other names/aliases CORS3
FTM
JBTS7
MKS5
NPHP8
PPP1R134
Species Homo sapiens
 Database cross references - RPGRIP1L
ExoCarta ExoCarta_23322
Vesiclepedia VP_23322
Entrez Gene 23322
HGNC 29168
MIM 610937
UniProt Q68CZ1  
 RPGRIP1L identified in sEVs derived from the following tissue/cell type
Neuroblastoma cells 25944692    
 Gene ontology annotations for RPGRIP1L
Molecular Function
    protein binding GO:0005515 IPI
    thromboxane A2 receptor binding GO:0031870 IBA
    thromboxane A2 receptor binding GO:0031870 IPI
Biological Process
    in utero embryonic development GO:0001701 IEA
    establishment of planar polarity GO:0001736 IEA
    kidney development GO:0001822 IEA
    liver development GO:0001889 IEA
    establishment or maintenance of cell polarity GO:0007163 IEA
    determination of left/right symmetry GO:0007368 IEA
    regulation of smoothened signaling pathway GO:0008589 IEA
    neural tube patterning GO:0021532 IEA
    cerebellum development GO:0021549 IEA
    lateral ventricle development GO:0021670 IEA
    olfactory bulb development GO:0021772 IEA
    corpus callosum development GO:0022038 IEA
    embryonic forelimb morphogenesis GO:0035115 IEA
    embryonic hindlimb morphogenesis GO:0035116 IEA
    nose development GO:0043584 IEA
    negative regulation of G protein-coupled receptor signaling pathway GO:0045744 IDA
    retinal rod cell development GO:0046548 IBA
    pericardium development GO:0060039 IEA
    cochlea development GO:0090102 IEA
    non-motile cilium assembly GO:1905515 IBA
Subcellular Localization
    nucleoplasm GO:0005654 IDA
    cytoplasm GO:0005737 IDA
    centrosome GO:0005813 IDA
    cytosol GO:0005829 IDA
    cytosol GO:0005829 TAS
    axonemal microtubule GO:0005879 IEA
    plasma membrane GO:0005886 IDA
    cell-cell junction GO:0005911 IDA
    bicellular tight junction GO:0005923 IEA
    cilium GO:0005929 IDA
    axoneme GO:0005930 IDA
    photoreceptor connecting cilium GO:0032391 IBA
    ciliary rootlet GO:0035253 IEA
    ciliary transition zone GO:0035869 IDA
    ciliary basal body GO:0036064 IDA
 Experiment description of studies that identified RPGRIP1L in sEVs
1
Experiment ID 224
MISEV standards
EM|AFM
Biophysical techniques
Alix|TSG101|CD63|CD81
Enriched markers
GOLGA2
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25944692    
Organism Homo sapiens
Experiment description Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes
Authors "Keerthikumar S, Gangoda L, Liem M, Fonseka P, Atukorala I, Ozcitti C, Mechler A, Adda CG, Ang CS, Mathivanan S"
Journal name Oncotarget
Publication year 2015
Sample Neuroblastoma cells
Sample name SH-SY5Y
Isolation/purification methods Differential centrifugation
Ultracentrifugation
OptiPrep density gradient
Flotation density 1.10 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
 Protein-protein interactions for RPGRIP1L
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 NEK1  
Affinity Capture-MS Homo sapiens
2 THEG  
Affinity Capture-MS Homo sapiens
3 ZSCAN29  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
4 WHAMMP3  
Affinity Capture-MS Homo sapiens
5 FTL 2512
Affinity Capture-MS Homo sapiens
6 NUP133 55746
Affinity Capture-MS Homo sapiens
7 TP53 7157
Affinity Capture-MS Homo sapiens
8 MSH2 4436
Affinity Capture-MS Homo sapiens
9 SPATA7 55812
Affinity Capture-MS Homo sapiens
10 NINL  
Proximity Label-MS Homo sapiens
11 ECT2 1894
Affinity Capture-MS Homo sapiens
12 C15orf59  
Affinity Capture-MS Homo sapiens
13 TRIM52  
Affinity Capture-MS Homo sapiens
14 KRT8 3856
Proximity Label-MS Homo sapiens
15 ABCF1 23
Affinity Capture-MS Homo sapiens
16 FBXO38 81545
Proximity Label-MS Homo sapiens
17 CLUH 23277
Affinity Capture-MS Homo sapiens
18 RPP25L  
Affinity Capture-MS Homo sapiens
19 NPHP1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
20 SHMT2 6472
Affinity Capture-RNA Homo sapiens
21 RAI14 26064
Affinity Capture-MS Homo sapiens
22 TBXA2R 6915
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
23 NXF1 10482
Affinity Capture-RNA Homo sapiens
24 DUSP13  
Proximity Label-MS Homo sapiens
25 CDK5RAP2 55755
Proximity Label-MS Homo sapiens
26 RPGR  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
27 TRIM37  
Proximity Label-MS Homo sapiens
28 C21orf2  
Affinity Capture-MS Homo sapiens
29 ZUFSP 221302
Affinity Capture-MS Homo sapiens
30 NIN 51199
Proximity Label-MS Homo sapiens
31 TEFM  
Affinity Capture-MS Homo sapiens
32 CEP135  
Proximity Label-MS Homo sapiens
33 KRT18 3875
Proximity Label-MS Homo sapiens
34 NEK4  
Affinity Capture-MS Homo sapiens
35 PNMA2  
Affinity Capture-MS Homo sapiens
36 NDC80 10403
Proximity Label-MS Homo sapiens
37 GKAP1  
Affinity Capture-MS Homo sapiens
38 RAF1 5894
Affinity Capture-MS Homo sapiens
39 PCNT  
Proximity Label-MS Homo sapiens
40 STIL  
Proximity Label-MS Homo sapiens
41 PCM1 5108
Proximity Label-MS Homo sapiens
42 DYNLL2 140735
Affinity Capture-MS Homo sapiens
43 MPRIP 23164
Affinity Capture-MS Homo sapiens
44 NPHP4 261734
Affinity Capture-MS Homo sapiens
45 DYNLL1 8655
Affinity Capture-MS Homo sapiens
46 RMDN3 55177
Proximity Label-MS Homo sapiens
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