Gene description for SMC5
Gene name structural maintenance of chromosomes 5
Gene symbol SMC5
Other names/aliases SMC5L1
Species Homo sapiens
 Database cross references - SMC5
ExoCarta ExoCarta_23137
Vesiclepedia VP_23137
Entrez Gene 23137
HGNC 20465
MIM 609386
UniProt Q8IY18  
 SMC5 identified in sEVs derived from the following tissue/cell type
Colorectal cancer cells 23161513    
Colorectal cancer cells 23161513    
Colorectal cancer cells 23161513    
Endothelial cells 26027894    
 Gene ontology annotations for SMC5
Molecular Function
    DNA secondary structure binding GO:0000217 IDA
    single-stranded DNA binding GO:0003697 IBA
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    ATP hydrolysis activity GO:0016887 IEA
Biological Process
    telomere maintenance via recombination GO:0000722 IMP
    double-strand break repair via homologous recombination GO:0000724 IBA
    double-strand break repair via homologous recombination GO:0000724 IMP
    double-strand break repair via homologous recombination GO:0000724 NAS
    double-strand break repair via nonhomologous end joining GO:0006303 IMP
    DNA damage response GO:0006974 IDA
    chromosome segregation GO:0007059 IEA
    protein sumoylation GO:0016925 NAS
    stem cell population maintenance GO:0019827 IEA
    chromosome condensation GO:0030261 IEA
    regulation of telomere maintenance GO:0032204 NAS
    positive regulation of maintenance of mitotic sister chromatid cohesion GO:0034184 IMP
    mitotic cell cycle phase transition GO:0044772 IEA
    negative regulation by host of viral genome replication GO:0044828 IDA
    cell division GO:0051301 IEA
    positive regulation of chromosome segregation GO:0051984 IMP
    protein localization to chromosome, centromeric region GO:0071459 IEA
    cellular senescence GO:0090398 IMP
    chromatin looping GO:0140588 NAS
Subcellular Localization
    chromosome, centromeric region GO:0000775 IEA
    chromosome, telomeric region GO:0000781 IDA
    chromosome, telomeric region GO:0000781 NAS
    sex chromosome GO:0000803 ISS
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    nucleus GO:0005634 IDA
    nucleus GO:0005634 ISS
    nucleoplasm GO:0005654 TAS
    cytoplasm GO:0005737 IEA
    PML body GO:0016605 IDA
    nuclear speck GO:0016607 IDA
    cell junction GO:0030054 IDA
    Smc5-Smc6 complex GO:0030915 IBA
    Smc5-Smc6 complex GO:0030915 IDA
    Smc5-Smc6 complex GO:0030915 NAS
    interchromatin granule GO:0035061 IDA
    site of double-strand break GO:0035861 IDA
 Experiment description of studies that identified SMC5 in sEVs
1
Experiment ID 207
MISEV standards
EM
Biophysical techniques
TSG101|HSP70|FLOT1
Enriched markers
VDAC
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors "Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name DKO-1
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 208
MISEV standards
EM
Biophysical techniques
TSG101|HSP70|FLOT1
Enriched markers
VDAC
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors "Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name Dks-8
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
3
Experiment ID 209
MISEV standards
Biophysical techniques
TSG101|HSP70|FLOT1
Enriched markers
VDAC
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors "Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name DLD-1
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
4
Experiment ID 226
MISEV standards
EM
Biophysical techniques
GAPDH|CD9|FLOT1
Enriched markers
LMNA|H2AFX|ATP5A1|TOMM20
Negative markers
Particle analysis
Identified molecule mRNA
Identification method Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID 26027894    
Organism Homo sapiens
Experiment description "Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting"
Authors "Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar"
Journal name Journal of Extracellular Vesicles
Publication year 2015
Sample Endothelial cells
Sample name HMEC-1
Isolation/purification methods Differential ultracentrifugation
Sucrose density gradient
Flotation density 1.10 g/mL
Molecules identified in the study miRNA
Protein
snoRNA
lncRNA
yRNA
snRNA
mRNA
ncRNA
mtRNA
vtRNA
scaRNA
lincRNA
Methods used in the study Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
Western blotting
 Protein-protein interactions for SMC5
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 DISC1 27185
Two-hybrid Homo sapiens
2 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
3 TERF2  
Co-localization Homo sapiens
4 SMN1 6606
Two-hybrid Homo sapiens
5 NSMCE1  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
6 Osgep  
Affinity Capture-MS Mus musculus
7 TP53 7157
Affinity Capture-MS Homo sapiens
8 NSMCE2  
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
9 Smc6  
Affinity Capture-MS Mus musculus
10 ANKRD32  
Affinity Capture-MS Homo sapiens
11 SMC6  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-purification Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
12 NDNL2 56160
Co-fractionation Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
13 VHL  
Two-hybrid Homo sapiens
14 OBFC1 79991
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
15 KIAA1524 57650
Two-hybrid Homo sapiens
16 FAM178A  
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
17 RAD50 10111
Co-fractionation Homo sapiens
18 ACACA 31
Positive Genetic Homo sapiens
19 PJA1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
20 EID3  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
21 Sesn2  
Affinity Capture-MS Mus musculus
22 RFXANK  
Affinity Capture-MS Homo sapiens
23 ZNF597  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
24 PTGES3 10728
Affinity Capture-MS Homo sapiens
25 Ufl1  
Affinity Capture-MS Mus musculus
26 NSMCE4A  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
27 HECTD1 25831
Affinity Capture-MS Homo sapiens
28 PML 5371
Co-localization Homo sapiens
29 SGTA 6449
Co-fractionation Homo sapiens
30 RABL2A 11159
Co-fractionation Homo sapiens
31 TIMELESS  
Affinity Capture-Western Homo sapiens
32 TK1 7083
Two-hybrid Homo sapiens
View the network image/svg+xml



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