Gene description for CCDC88B
Gene name
coiled-coil domain containing 88B
Gene symbol
CCDC88B
Other names/aliases
BRLZ CCDC88 HKRP3 gipie
Species
Homo sapiens
Database cross references - CCDC88B
ExoCarta
ExoCarta_283234
Vesiclepedia
VP_283234
Entrez Gene
283234
HGNC
26757
MIM
611205
UniProt
A6NC98
CCDC88B identified in sEVs derived from the following tissue/cell type
Urine
21595033
Urine
21595033
Urine
21595033
Gene ontology annotations for CCDC88B
Experiment description of studies that identified CCDC88B in sEVs
1
Experiment ID
193
MISEV standards
✔
EM
Biophysical techniques
✔
CD63|CD9
Enriched markers
✔
PHB
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
21595033
Organism
Homo sapiens
Experiment description
Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy.
Authors
"Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC."
Journal name
Proteomics
Publication year
2011
Sample
Urine
Sample name
Urine - Normal
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
2
Experiment ID
194
MISEV standards
✘
Biophysical techniques
✘
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
21595033
Organism
Homo sapiens
Experiment description
Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy.
Authors
"Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC."
Journal name
Proteomics
Publication year
2011
Sample
Urine
Sample name
Urine - Patients of basement membrane nephropathy
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
3
Experiment ID
195
MISEV standards
✘
Biophysical techniques
✘
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
21595033
Organism
Homo sapiens
Experiment description
Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy.
Authors
"Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC."
Journal name
Proteomics
Publication year
2011
Sample
Urine
Sample name
Urine - Patients of early IgA nephropathy
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for CCDC88B
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
BEX2
Two-hybrid
Homo sapiens
2
CDC73
Affinity Capture-MS
Homo sapiens
3
LMNB1
4001
Two-hybrid
Homo sapiens
4
HOXB5
Two-hybrid
Homo sapiens
5
PIN1
5300
Two-hybrid
Homo sapiens
6
TSHZ2
Two-hybrid
Homo sapiens
7
LMNB2
84823
Two-hybrid
Homo sapiens
8
TXLNB
Two-hybrid
Homo sapiens
9
CCHCR1
Two-hybrid
Homo sapiens
10
TSGA10IP
Two-hybrid
Homo sapiens
11
CDK18
5129
Two-hybrid
Homo sapiens
12
FAM161B
Two-hybrid
Homo sapiens
13
CWF19L2
Two-hybrid
Homo sapiens
14
HCK
3055
Two-hybrid
Homo sapiens
15
DDX58
23586
Affinity Capture-RNA
Homo sapiens
16
KRT27
342574
Affinity Capture-MS
Homo sapiens
17
PLEKHA5
54477
Two-hybrid
Homo sapiens
18
GEM
Two-hybrid
Homo sapiens
19
CARD9
64170
Two-hybrid
Homo sapiens
20
JAKMIP2
Two-hybrid
Homo sapiens
21
DTNB
1838
Two-hybrid
Homo sapiens
22
FAM161A
Two-hybrid
Homo sapiens
23
RINT1
60561
Two-hybrid
Homo sapiens
24
NME7
29922
Two-hybrid
Homo sapiens
25
C1orf109
Two-hybrid
Homo sapiens
26
KANK2
25959
Two-hybrid
Homo sapiens
27
PPP1R18
170954
Two-hybrid
Homo sapiens
28
SH2D4A
63898
Two-hybrid
Homo sapiens
29
LMO1
Two-hybrid
Homo sapiens
30
ZC2HC1C
Two-hybrid
Homo sapiens
31
SH3KBP1
30011
Two-hybrid
Homo sapiens
32
TSGA10
Two-hybrid
Homo sapiens
View the network
image/svg+xml
Pathways in which CCDC88B is involved
No pathways found