Gene description for IRF6
Gene name interferon regulatory factor 6
Gene symbol IRF6
Other names/aliases LPS
OFC6
PIT
PPS
PPS1
VWS
VWS1
Species Homo sapiens
 Database cross references - IRF6
ExoCarta ExoCarta_3664
Vesiclepedia VP_3664
Entrez Gene 3664
HGNC 6121
MIM 607199
UniProt O14896  
 IRF6 identified in sEVs derived from the following tissue/cell type
Urine 19056867    
 Gene ontology annotations for IRF6
Molecular Function
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IBA
    DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981 IBA
    DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981 ISA
    DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 IEA
    DNA binding GO:0003677 ISS
    DNA-binding transcription factor activity GO:0003700 ISS
    protein binding GO:0005515 IPI
    sequence-specific DNA binding GO:0043565 IDA
    sequence-specific double-stranded DNA binding GO:1990837 IDA
Biological Process
    immune system process GO:0002376 IBA
    regulation of transcription by RNA polymerase II GO:0006357 IBA
    negative regulation of cell population proliferation GO:0008285 IDA
    negative regulation of keratinocyte proliferation GO:0010839 IEA
    keratinocyte differentiation GO:0030216 IEA
    keratinocyte proliferation GO:0043616 IEA
    positive regulation of DNA-templated transcription GO:0045893 ISS
    positive regulation of transcription by RNA polymerase II GO:0045944 IDA
    cell development GO:0048468 IEA
    roof of mouth development GO:0060021 IEA
    limb development GO:0060173 IEA
    mammary gland epithelial cell differentiation GO:0060644 ISS
    stem cell proliferation GO:0072089 IEA
    cranial skeletal system development GO:1904888 IEA
    negative regulation of stem cell proliferation GO:2000647 IEA
Subcellular Localization
    chromatin GO:0000785 ISA
    nucleus GO:0005634 IBA
    cytoplasm GO:0005737 IDA
    cytosol GO:0005829 TAS
    extracellular exosome GO:0070062 HDA
 Experiment description of studies that identified IRF6 in sEVs
1
Experiment ID 63
MISEV standards
Biophysical techniques
AQP2
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19056867    
Organism Homo sapiens
Experiment description Large-scale proteomics and phosphoproteomics of urinary exosomes.
Authors "Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA"
Journal name JASN
Publication year 2009
Sample Urine
Sample name Urine - Normal
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
 Protein-protein interactions for IRF6
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 GRSF1 2926
Co-fractionation Homo sapiens
2 PRPS2 5634
Affinity Capture-MS Homo sapiens
3 CCDC101  
Affinity Capture-MS Homo sapiens
4 ABCF1 23
Co-fractionation Homo sapiens
5 TLX2  
Two-hybrid Homo sapiens
6 NUTM2F  
Affinity Capture-MS Homo sapiens
7 VPS26A 9559
Co-fractionation Homo sapiens
8 ZBTB3  
Two-hybrid Homo sapiens
9 BNC2  
Affinity Capture-MS Homo sapiens
10 RABGGTA 5875
Co-fractionation Homo sapiens
11 RFX3 5991
Two-hybrid Homo sapiens
12 OSGEP 55644
Co-fractionation Homo sapiens
13 IRF8  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
14 IRF5  
Affinity Capture-MS Homo sapiens
15 RABGGTB 5876
Co-fractionation Homo sapiens
View the network image/svg+xml



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