Gene description for Ruvbl1
Gene name RuvB-like AAA ATPase 1
Gene symbol Ruvbl1
Other names/aliases NMP238
Pontin52
Tip49a
Species Rattus norvegicus
 Database cross references - Ruvbl1
ExoCarta ExoCarta_65137
Vesiclepedia VP_65137
Entrez Gene 65137
UniProt P60123  
 Ruvbl1 identified in sEVs derived from the following tissue/cell type
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
 Gene ontology annotations for Ruvbl1
Molecular Function
    TFIID-class transcription factor complex binding GO:0001094 ISO
    DNA helicase activity GO:0003678 IBA
    DNA helicase activity GO:0003678 ISO
    DNA clamp loader activity GO:0003689 IEA
    transcription coactivator activity GO:0003713 ISO
    helicase activity GO:0004386 IEA
    ATP binding GO:0005524 IEA
    ATP binding GO:0005524 ISO
    ATP-dependent activity, acting on DNA GO:0008094 IEA
    four-way junction helicase activity GO:0009378 IEA
    hydrolase activity GO:0016787 IEA
    ATP hydrolysis activity GO:0016887 ISO
    ATP hydrolysis activity GO:0016887 ISS
    TBP-class protein binding GO:0017025 ISO
    double-stranded DNA helicase activity GO:0036121 IEA
    3'-5' DNA helicase activity GO:0043138 IDA
    ADP binding GO:0043531 ISO
    ATPase binding GO:0051117 ISO
    forked DNA-dependent helicase activity GO:0061749 IEA
    cohesin loader activity GO:0061775 IEA
    chromatin extrusion motor activity GO:0140584 IEA
    ATP-dependent H3-H4 histone complex chaperone activity GO:0140665 IEA
    ATP-dependent H2AZ histone chaperone activity GO:0140849 IEA
    single-stranded 3'-5' DNA helicase activity GO:1990518 IEA
Biological Process
    box C/D snoRNP assembly GO:0000492 IBA
    telomere maintenance GO:0000723 ISO
    regulation of DNA replication GO:0006275 ISO
    DNA repair GO:0006281 IEA
    regulation of DNA repair GO:0006282 ISO
    DNA recombination GO:0006310 IEA
    chromatin remodeling GO:0006338 IBA
    chromatin remodeling GO:0006338 ISO
    regulation of transcription by RNA polymerase II GO:0006357 IBA
    positive regulation of plasminogen activation GO:0010756 IDA
    DNA duplex unwinding GO:0032508 IEA
    regulation of chromosome organization GO:0033044 ISO
    positive regulation of DNA repair GO:0045739 ISO
    positive regulation of DNA-templated transcription GO:0045893 ISO
    regulation of embryonic development GO:0045995 ISO
    cell division GO:0051301 IEA
    regulation of cell cycle GO:0051726 ISO
    regulation of DNA strand elongation GO:0060382 ISO
    positive regulation of canonical Wnt signaling pathway GO:0090263 ISO
    telomerase RNA localization to Cajal body GO:0090671 ISO
    chromatin looping GO:0140588 IEA
    positive regulation of telomere maintenance in response to DNA damage GO:1904507 ISO
    positive regulation of double-strand break repair via homologous recombination GO:1905168 ISO
    regulation of fibroblast apoptotic process GO:2000269 IMP
Subcellular Localization
    nucleosome GO:0000786 ISO
    Swr1 complex GO:0000812 IBA
    Swr1 complex GO:0000812 ISO
    Swr1 complex GO:0000812 ISS
    nucleus GO:0005634 IEA
    nucleus GO:0005634 ISO
    nucleoplasm GO:0005654 ISO
    centrosome GO:0005813 IEA
    cytosol GO:0005829 ISO
    nuclear matrix GO:0016363 IDA
    Ino80 complex GO:0031011 IBA
    Ino80 complex GO:0031011 ISO
    nuclear membrane GO:0031965 IEA
    protein-containing complex GO:0032991 IDA
    NuA4 histone acetyltransferase complex GO:0035267 IBA
    NuA4 histone acetyltransferase complex GO:0035267 ISO
    NuA4 histone acetyltransferase complex GO:0035267 ISS
    MLL1 complex GO:0071339 ISO
    MLL1 complex GO:0071339 ISS
    R2TP complex GO:0097255 IBA
    R2TP complex GO:0097255 ISO
    R2TP complex GO:0097255 ISS
    protein folding chaperone complex GO:0101031 ISO
    dynein axonemal particle GO:0120293 ISS
    RPAP3/R2TP/prefoldin-like complex GO:1990062 ISO
    ribonucleoprotein complex GO:1990904 ISO
 Experiment description of studies that identified Ruvbl1 in sEVs
1
Experiment ID 90
MISEV standards
EM
Biophysical techniques
HSC70|HSP90|TSG101|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E"
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
2
Experiment ID 95
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
3
Experiment ID 96
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
4
Experiment ID 97
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
5
Experiment ID 98
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
 Protein-protein interactions for Ruvbl1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 PLG 5340
Reconstituted Complex Homo sapiens
2 Slc8a1  
Affinity Capture-MS Rattus norvegicus
3 Slc8a1  
Reconstituted Complex Mus musculus
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