Gene description for DDX11
Gene name DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
Gene symbol DDX11
Other names/aliases CHL1
CHLR1
KRG2
WABS
Species Homo sapiens
 Database cross references - DDX11
ExoCarta ExoCarta_1663
Vesiclepedia VP_1663
Entrez Gene 1663
HGNC 2736
MIM 601150
UniProt Q96FC9  
 DDX11 identified in sEVs derived from the following tissue/cell type
Hepatocytes 26054723    
 Gene ontology annotations for DDX11
Molecular Function
    DNA binding GO:0003677 IDA
    DNA helicase activity GO:0003678 IBA
    DNA helicase activity GO:0003678 IDA
    chromatin binding GO:0003682 IDA
    chromatin binding GO:0003682 IMP
    DNA replication origin binding GO:0003688 IMP
    DNA clamp loader activity GO:0003689 IEA
    double-stranded DNA binding GO:0003690 IDA
    single-stranded DNA binding GO:0003697 IDA
    single-stranded RNA binding GO:0003727 IDA
    helicase activity GO:0004386 IDA
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    ATP-dependent activity, acting on DNA GO:0008094 IDA
    ATP-dependent activity, acting on DNA GO:0008094 IMP
    ATP-dependent activity, acting on RNA GO:0008186 IDA
    four-way junction helicase activity GO:0009378 IEA
    isomerase activity GO:0016853 IEA
    ATP hydrolysis activity GO:0016887 IEA
    double-stranded DNA helicase activity GO:0036121 IEA
    5'-3' DNA helicase activity GO:0043139 IDA
    triplex DNA binding GO:0045142 IDA
    metal ion binding GO:0046872 IEA
    4 iron, 4 sulfur cluster binding GO:0051539 IEA
    G-quadruplex DNA binding GO:0051880 IDA
    forked DNA-dependent helicase activity GO:0061749 IEA
    cohesin loader activity GO:0061775 IEA
    chromatin extrusion motor activity GO:0140584 IEA
    ATP-dependent H3-H4 histone complex chaperone activity GO:0140665 IEA
    ATP-dependent H2AZ histone chaperone activity GO:0140849 IEA
    single-stranded 3'-5' DNA helicase activity GO:1990518 IEA
Biological Process
    DNA repair GO:0006281 IEA
    chromatin remodeling GO:0006338 IEA
    DNA damage response GO:0006974 IMP
    sister chromatid cohesion GO:0007062 IDA
    replication fork processing GO:0031297 IMP
    positive regulation of endodeoxyribonuclease activity GO:0032079 IDA
    negative regulation of protein binding GO:0032091 IMP
    DNA duplex unwinding GO:0032508 IBA
    DNA duplex unwinding GO:0032508 IDA
    establishment of sister chromatid cohesion GO:0034085 IBA
    positive regulation of chromatin binding GO:0035563 IDA
    G-quadruplex DNA unwinding GO:0044806 IDA
    positive regulation of sister chromatid cohesion GO:0045876 IMP
    cellular response to hydroxyurea GO:0072711 IMP
    cellular response to cisplatin GO:0072719 IMP
    chromatin looping GO:0140588 IEA
    positive regulation of transcription of nucleolar large rRNA by RNA polymerase I GO:1901838 IMP
    cellular response to bleomycin GO:1904976 IMP
    nucleolar chromatin organization GO:1990700 IMP
    positive regulation of double-strand break repair GO:2000781 IMP
Subcellular Localization
    chromatin GO:0000785 IDA
    spindle pole GO:0000922 IDA
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    nucleolus GO:0005730 IDA
    cytoplasm GO:0005737 IEA
    centrosome GO:0005813 IDA
    midbody GO:0030496 IDA
    mitotic cohesin complex GO:0030892 IDA
    Ctf18 RFC-like complex GO:0031390 IDA
    extracellular exosome GO:0070062 HDA
 Experiment description of studies that identified DDX11 in sEVs
1
Experiment ID 237
MISEV standards
EM
Biophysical techniques
TSG101|Alix|HSC70|GAPDH
Enriched markers
HSP90B1
Negative markers
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocytes
Sample name MIHA
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RNA Sequencing
 Protein-protein interactions for DDX11
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 WDFY3 23001
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
2 NOL4  
Affinity Capture-MS Homo sapiens
3 PFN2 5217
Two-hybrid Homo sapiens
4 IL17RA 23765
Affinity Capture-MS Homo sapiens
5 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
6 ZNF174  
Affinity Capture-MS Homo sapiens
7 USP43  
Affinity Capture-MS Homo sapiens
8 CUL3 8452
Affinity Capture-MS Homo sapiens
9 AVIL  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
10 TOMM22 56993
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
11 FEN1 2237
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
12 DOCK5 80005
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
13 NPRL3  
Affinity Capture-MS Homo sapiens
14 FUZ 80199
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
15 DSCC1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
16 EFNB1 1947
Affinity Capture-MS Homo sapiens
17 CHTF18 63922
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
18 VCPIP1 80124
Affinity Capture-MS Homo sapiens
19 PLAUR 5329
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
20 AZIN2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
21 FKBP5 2289
Affinity Capture-MS Homo sapiens
22 SKP2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
23 ERP27  
Affinity Capture-MS Homo sapiens
24 CNOT2  
Affinity Capture-MS Homo sapiens
25 CDH23 64072
Affinity Capture-MS Homo sapiens
26 KLHL34  
Affinity Capture-MS Homo sapiens
27 TGM2 7052
Affinity Capture-MS Homo sapiens
28 GGT7 2686
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
29 KAT7  
Two-hybrid Homo sapiens
30 SNX21  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
31 DNAJA2 10294
Affinity Capture-MS Homo sapiens
32 ATXN7L1 222255
Affinity Capture-MS Homo sapiens
33 PRRC2B  
Two-hybrid Homo sapiens
34 PCNA 5111
Affinity Capture-Western Homo sapiens
35 EDN3  
Affinity Capture-MS Homo sapiens
36 EIF4ENIF1 56478
Two-hybrid Homo sapiens
37 PPP4R1L  
Affinity Capture-MS Homo sapiens
38 SMG9 56006
Affinity Capture-MS Homo sapiens
39 EZH2  
Affinity Capture-RNA Homo sapiens
40 IARS2 55699
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
41 NAA11 84779
Affinity Capture-MS Homo sapiens
42 FAM46A  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
43 Htatsf1  
Two-hybrid Mus musculus
44 THBS3 7059
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
45 PCDHA4 56144
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
46 SLURP1  
Affinity Capture-MS Homo sapiens
47 HHIPL1 84439
Affinity Capture-MS Homo sapiens
48 C9orf72  
Affinity Capture-MS Homo sapiens
49 KBTBD4  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
50 SLC31A1 1317
Affinity Capture-MS Homo sapiens
51 RFC2 5982
Affinity Capture-Western Homo sapiens
52 YBEY  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
53 DNMT1 1786
Affinity Capture-RNA Homo sapiens
54 CCT8L2  
Affinity Capture-MS Homo sapiens
55 AGBL4  
Affinity Capture-MS Homo sapiens
56 PRPS2 5634
Affinity Capture-MS Homo sapiens
57 CAMK2G 818
Co-fractionation Homo sapiens
58 CDH19  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
59 FANCA  
Affinity Capture-Luminescence Homo sapiens
60 SDHAP2  
Affinity Capture-MS Homo sapiens
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