Gene description for Ngfr
Gene name nerve growth factor receptor (TNFR superfamily, member 16)
Gene symbol Ngfr
Other names/aliases LNGFR
Tnfrsf16
p75
p75NGFR
p75NTR
Species Mus musculus
 Database cross references - Ngfr
ExoCarta ExoCarta_18053
Vesiclepedia VP_18053
Entrez Gene 18053
 Ngfr identified in sEVs derived from the following tissue/cell type
Melanoma cells 34957415    
Melanoma cells 34957415    
Melanoma cells 34957415    
Melanoma cells 34957415    
 Gene ontology annotations for Ngfr
Molecular Function
    amyloid-beta binding GO:0001540 ISO
    death receptor activity GO:0005035 IBA
    death receptor activity GO:0005035 IDA
    death receptor activity GO:0005035 ISO
    neurotrophin TRKA receptor binding GO:0005168 ISO
    protein binding GO:0005515 IPI
    calmodulin binding GO:0005516 ISO
    calmodulin binding GO:0005516 ISS
    coreceptor activity GO:0015026 IBA
    coreceptor activity GO:0015026 IEA
    coreceptor activity GO:0015026 ISO
    small GTPase binding GO:0031267 IDA
    ubiquitin protein ligase binding GO:0031625 IEA
    ubiquitin protein ligase binding GO:0031625 ISO
    identical protein binding GO:0042802 ISO
    neurotrophin binding GO:0043121 ISO
    protein-containing complex binding GO:0044877 ISO
    nerve growth factor binding GO:0048406 IBA
    nerve growth factor binding GO:0048406 IDA
    nerve growth factor binding GO:0048406 ISO
    preprotein binding GO:0070678 ISO
Biological Process
    intracellular glucose homeostasis GO:0001678 IMP
    hair follicle development GO:0001942 IMP
    intracellular protein transport GO:0006886 IMP
    Rho protein signal transduction GO:0007266 IBA
    Rho protein signal transduction GO:0007266 IEA
    Rho protein signal transduction GO:0007266 ISO
    axon guidance GO:0007411 IMP
    central nervous system development GO:0007417 IMP
    circadian rhythm GO:0007623 IEP
    fibroblast growth factor receptor signaling pathway GO:0008543 IMP
    regulation of gene expression GO:0010468 IMP
    positive regulation of neuron projection development GO:0010976 ISO
    negative regulation of neuron projection development GO:0010977 ISO
    detection of temperature stimulus GO:0016048 IMP
    negative regulation of angiogenesis GO:0016525 ISO
    nerve development GO:0021675 IMP
    negative regulation of cell migration GO:0030336 IEA
    negative regulation of cell migration GO:0030336 ISO
    hair follicle morphogenesis GO:0031069 IMP
    positive regulation of myelination GO:0031643 ISO
    positive regulation of synaptic transmission, cholinergic GO:0032224 ISO
    circadian regulation of gene expression GO:0032922 IMP
    cellular response to oxidative stress GO:0034599 ISO
    positive regulation of Rho protein signal transduction GO:0035025 ISO
    dorsal aorta development GO:0035907 IMP
    negative regulation of fibroblast growth factor receptor signaling pathway GO:0040037 IMP
    odontogenesis of dentin-containing tooth GO:0042475 IMP
    positive regulation of odontogenesis of dentin-containing tooth GO:0042488 IMP
    glucose homeostasis GO:0042593 IMP
    positive regulation of apoptotic process GO:0043065 ISO
    negative regulation of apoptotic process GO:0043066 ISO
    positive regulation of MAPK cascade GO:0043410 ISO
    negative regulation of neuron apoptotic process GO:0043524 ISO
    skin development GO:0043588 IMP
    positive regulation of neuron differentiation GO:0045666 ISO
    fibroblast proliferation GO:0048144 IMP
    positive regulation of fibroblast proliferation GO:0048146 IMP
    neuron apoptotic process GO:0051402 IEA
    neuron apoptotic process GO:0051402 ISO
    negative regulation of hair follicle development GO:0051799 IMP
    positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 ISO
    negative regulation of mitochondrial depolarization GO:0051902 ISO
    positive regulation of synaptic transmission, glutamatergic GO:0051968 ISO
    negative regulation of dendritic spine development GO:0061000 ISO
    presynaptic modulation of chemical synaptic transmission GO:0099171 IDA
    presynaptic modulation of chemical synaptic transmission GO:0099171 IMP
    positive regulation of protein localization to nucleus GO:1900182 IEA
    positive regulation of protein localization to nucleus GO:1900182 ISO
    positive regulation of miRNA transcription GO:1902895 IEA
    positive regulation of miRNA transcription GO:1902895 ISO
    negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis GO:1903588 IEA
    negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis GO:1903588 ISO
    cellular response to amyloid-beta GO:1904646 IEA
    cellular response to amyloid-beta GO:1904646 ISO
    positive regulation of neural precursor cell proliferation GO:2000179 ISO
    regulation of reactive oxygen species metabolic process GO:2000377 ISO
    positive regulation of excitatory postsynaptic potential GO:2000463 ISO
    positive regulation of cysteine-type endopeptidase activity GO:2001056 ISO
    positive regulation of apoptotic signaling pathway GO:2001235 IDA
Subcellular Localization
    nuclear envelope GO:0005635 ISO
    nucleoplasm GO:0005654 IEA
    nucleoplasm GO:0005654 ISO
    cytoplasm GO:0005737 IDA
    mitochondrion GO:0005739 ISO
    plasma membrane GO:0005886 IBA
    plasma membrane GO:0005886 IDA
    plasma membrane GO:0005886 ISO
    plasma membrane GO:0005886 ISS
    plasma membrane GO:0005886 TAS
    cell-cell junction GO:0005911 IDA
    external side of plasma membrane GO:0009897 ISO
    cell surface GO:0009986 IBA
    cell surface GO:0009986 IDA
    postsynaptic density GO:0014069 IDA
    growth cone GO:0030426 IEA
    neuromuscular junction GO:0031594 IDA
    neuromuscular junction GO:0031594 IMP
    neuromuscular junction GO:0031594 ISO
    dendrite membrane GO:0032590 ISO
    neuronal cell body membrane GO:0032809 ISO
    presynaptic membrane GO:0042734 ISO
    dendritic spine GO:0043197 IEA
    perikaryon GO:0043204 IEA
    perikaryon GO:0043204 ISO
    clathrin-coated endocytic vesicle GO:0045334 ISO
    presynapse GO:0098793 IEA
 Experiment description of studies that identified Ngfr in sEVs
1
Experiment ID 1102
MISEV standards
EM
Biophysical techniques
Cd81|Cd9|Tfrc|Gapdh|Lamp1
Enriched markers
GOLGA2|CANX
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Western blotting
Flow cytometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F10
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
Flow cytometry
2
Experiment ID 1103
MISEV standards
EM
Biophysical techniques
Cd81|Cd9|Tfrc|Gapdh|Lamp1
Enriched markers
GOLGA2|CANX
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Western blotting
Flow cytometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1R2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
Flow cytometry
3
Experiment ID 1117
MISEV standards
Biophysical techniques
Cd81|Icam1
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Western blotting
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1R2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
4
Experiment ID 1117
MISEV standards
Biophysical techniques
Cd81|Icam1
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1R2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
5
Experiment ID 1118
MISEV standards
Biophysical techniques
Cd81|Icam1
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1R2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
 Protein-protein interactions for Ngfr
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Siah2  
Affinity Capture-Western Mus musculus
Affinity Capture-Western Mus musculus
2 Zfp369  
Affinity Capture-Western Mus musculus
3 Zfp110  
Affinity Capture-Western Mus musculus
Affinity Capture-Western Mus musculus
4 Traf6  
Affinity Capture-Western Mus musculus
5 App 11820
Affinity Capture-Western Mus musculus
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