Gene description for SPTBN4
Gene name spectrin, beta, non-erythrocytic 4
Gene symbol SPTBN4
Other names/aliases QV
SPNB4
SPTBN3
Species Homo sapiens
 Database cross references - SPTBN4
ExoCarta ExoCarta_57731
Vesiclepedia VP_57731
Entrez Gene 57731
HGNC 14896
MIM 606214
UniProt Q9H254  
 SPTBN4 identified in sEVs derived from the following tissue/cell type
Mesenchymal stem cells Unpublished / Not applicable
Prostate cancer cells 25844599    
Squamous carcinoma cells 20124223    
 Gene ontology annotations for SPTBN4
Molecular Function
    actin binding GO:0003779 ISS
    structural constituent of cytoskeleton GO:0005200 TAS
    protein binding GO:0005515 IPI
    phospholipid binding GO:0005543 IEA
    phosphatase binding GO:0019902 IPI
    ankyrin binding GO:0030506 IDA
    spectrin binding GO:0030507 ISS
    actin filament binding GO:0051015 IBA
    cytoskeletal protein-membrane anchor activity GO:0106006 TAS
Biological Process
    regulation of sodium ion transport GO:0002028 ISS
    axonogenesis GO:0007409 ISS
    neuromuscular junction development GO:0007528 IEA
    sensory perception of sound GO:0007605 ISS
    adult walking behavior GO:0007628 ISS
    fertilization GO:0009566 IEA
    negative regulation of heart rate GO:0010459 ISS
    vesicle-mediated transport GO:0016192 TAS
    transmission of nerve impulse GO:0019226 ISS
    central nervous system projection neuron axonogenesis GO:0021952 IBA
    central nervous system projection neuron axonogenesis GO:0021952 ISS
    actin cytoskeleton organization GO:0030036 IBA
    positive regulation of multicellular organism growth GO:0040018 IEA
    clustering of voltage-gated sodium channels GO:0045162 ISS
    neuromuscular process GO:0050905 IEA
    actin filament capping GO:0051693 IEA
    cardiac conduction GO:0061337 ISS
    protein-containing complex assembly GO:0065003 IEA
    protein localization to plasma membrane GO:0072659 ISS
Subcellular Localization
    cytoplasm GO:0005737 IDA
    cytosol GO:0005829 TAS
    actin filament GO:0005884 ISS
    plasma membrane GO:0005886 IBA
    plasma membrane GO:0005886 ISS
    adherens junction GO:0005912 ISS
    spectrin GO:0008091 IDA
    intercalated disc GO:0014704 IEA
    membrane GO:0016020 IDA
    nuclear matrix GO:0016363 IDA
    PML body GO:0016605 IDA
    cell junction GO:0030054 IBA
    cortical actin cytoskeleton GO:0030864 IBA
    node of Ranvier GO:0033268 ISS
    paranode region of axon GO:0033270 IEA
    cell projection GO:0042995 IBA
    neuronal cell body GO:0043025 ISS
    axon initial segment GO:0043194 ISS
    axon hillock GO:0043203 ISS
    juxtaparanode region of axon GO:0044224 IEA
    extracellular exosome GO:0070062 HDA
    cell body fiber GO:0070852 ISS
 Experiment description of studies that identified SPTBN4 in sEVs
1
Experiment ID 126
MISEV standards
Biophysical techniques
GAPDH
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [LTQ-FT Ultra]
PubMed ID Unpublished / Not applicable
Organism Homo sapiens
Experiment description Mesenchymal Stem Cell Exosomes: The Future MSC-based Therapy?
Authors "Ruenn Chai Lai, Ronne Wee Yeh Yeo, Soon Sim Tan, Bin Zhang, Yijun Yin, Newman Siu Kwan Sze, Andre Choo, and Sai Kiang Lim"
Journal name Mesenchymal Stem Cell Therapy
Publication year 2011
Sample Mesenchymal stem cells
Sample name huES9.E1
Isolation/purification methods HPLC
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Antobody array
Mass spectrometry
2
Experiment ID 275
MISEV standards
EM
Biophysical techniques
TSG101|Alix|RAB5A|CD9|CD82|CD63|CD81
Enriched markers
AIF
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25844599    
Organism Homo sapiens
Experiment description Molecular profiling of prostate cancer derived exosomes may reveal a predictive signature for response to docetaxel.
Authors "Kharaziha P, Chioureas D, Rutishauser D, Baltatzis G, Lennartsson L, Fonseca P, Azimi A, Hultenby K, Zubarev R, Ullen A, Yachnin J, Nilsson S, Panaretakis T."
Journal name Oncotarget
Publication year 2015
Sample Prostate cancer cells
Sample name DU145 - Docetaxel sensitive
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.12-1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry/Flow cytometry/Western blotting
3
Experiment ID 191
MISEV standards
Biophysical techniques
Alix|CD81|CD9
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 20124223    
Organism Homo sapiens
Experiment description Hypoxic tumor cell modulates its microenvironment to enhance angiogenic and metastatic potential by secretion of proteins and exosomes.
Authors "Park JE, Tan HS, Datta A, Lai RC, Zhang H, Meng W, Lim SK, Sze SK."
Journal name Mol Cell Proteomics
Publication year 2010
Sample Squamous carcinoma cells
Sample name Squamous carcinoma cell (A431)
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for SPTBN4
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 HNRNPH1 3187
Affinity Capture-RNA Homo sapiens
2 ANLN 54443
Affinity Capture-MS Homo sapiens
3 DISC1 27185
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
4 POM121L1P  
Affinity Capture-MS Homo sapiens
5 SPTAN1 6709
Two-hybrid Homo sapiens
6 BKRF1  
Affinity Capture-MS
7 TIMD4  
Affinity Capture-MS Homo sapiens
8 GSK3B 2932
Two-hybrid Homo sapiens
9 KIF14 9928
Affinity Capture-MS Homo sapiens
10 ANTXR2 118429
Affinity Capture-MS Homo sapiens
11 ECT2 1894
Affinity Capture-MS Homo sapiens
12 GADD45A  
Two-hybrid Homo sapiens
13 PNP 4860
Affinity Capture-MS Homo sapiens
14 CDC37 11140
Two-hybrid Homo sapiens
15 PFDN1 5201
Two-hybrid Homo sapiens
16 PTPRN2  
Two-hybrid Homo sapiens
17 SPTA1  
Affinity Capture-Western Homo sapiens
18 KIF20A 10112
Affinity Capture-MS Homo sapiens
19 NHLRC2 374354
Affinity Capture-MS Homo sapiens
20 PCDHGC3 5098
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
21 RSBN1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
22 HOMER1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
23 SPTBN1 6711
Cross-Linking-MS (XL-MS) Homo sapiens
24 A2ML1 144568
Affinity Capture-MS Homo sapiens
25 TPPP 11076
Affinity Capture-MS Homo sapiens
26 CENPU  
Two-hybrid Homo sapiens
27 CHMP4C 92421
Affinity Capture-MS Homo sapiens
28 NEK2  
Two-hybrid Homo sapiens
29 CHMP4B 128866
Affinity Capture-MS Homo sapiens
30 ESRRB  
Affinity Capture-MS Homo sapiens
31 ETS1  
Affinity Capture-MS Homo sapiens
32 PTPRN  
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
33 PRC1 9055
Affinity Capture-MS Homo sapiens
34 ANK3  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
35 RPS6KA6 27330
Two-hybrid Homo sapiens
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