Gene description for RYR1
Gene name ryanodine receptor 1 (skeletal)
Gene symbol RYR1
Other names/aliases CCO
MHS
MHS1
PPP1R137
RYDR
RYR
RYR-1
SKRR
Species Homo sapiens
 Database cross references - RYR1
ExoCarta ExoCarta_6261
Vesiclepedia VP_6261
Entrez Gene 6261
HGNC 10483
MIM 180901
UniProt P21817  
 RYR1 identified in sEVs derived from the following tissue/cell type
Ovarian cancer cells 23333927    
Ovarian cancer cells 23333927    
Prostate cancer cells 25844599    
Urine 19056867    
 Gene ontology annotations for RYR1
Molecular Function
    ryanodine-sensitive calcium-release channel activity GO:0005219 IBA
    ryanodine-sensitive calcium-release channel activity GO:0005219 IDA
    ryanodine-sensitive calcium-release channel activity GO:0005219 IMP
    ryanodine-sensitive calcium-release channel activity GO:0005219 ISS
    ryanodine-sensitive calcium-release channel activity GO:0005219 TAS
    voltage-gated calcium channel activity GO:0005245 ISS
    calcium channel activity GO:0005262 ISS
    calcium ion binding GO:0005509 ISS
    calmodulin binding GO:0005516 ISS
    ATP binding GO:0005524 ISS
    intracellularly gated calcium channel activity GO:0015278 TAS
    calcium-induced calcium release activity GO:0048763 IMP
Biological Process
    response to hypoxia GO:0001666 IDA
    outflow tract morphogenesis GO:0003151 ISS
    calcium ion transport GO:0006816 ISS
    muscle contraction GO:0006936 ISS
    striated muscle contraction GO:0006941 IBA
    release of sequestered calcium ion into cytosol by sarcoplasmic reticulum GO:0014808 IBA
    release of sequestered calcium ion into cytosol by sarcoplasmic reticulum GO:0014808 ISS
    calcium-mediated signaling GO:0019722 IEA
    response to caffeine GO:0031000 ISS
    skin development GO:0043588 ISS
    ossification involved in bone maturation GO:0043931 ISS
    skeletal muscle fiber development GO:0048741 ISS
    release of sequestered calcium ion into cytosol GO:0051209 IDA
    release of sequestered calcium ion into cytosol GO:0051209 IMP
    release of sequestered calcium ion into cytosol GO:0051209 ISS
    protein homotetramerization GO:0051289 ISS
    regulation of cytosolic calcium ion concentration GO:0051480 ISS
    cellular response to calcium ion GO:0071277 ISS
    cellular response to caffeine GO:0071313 IMP
    cellular response to caffeine GO:0071313 ISS
Subcellular Localization
    cytoplasm GO:0005737 IDA
    smooth endoplasmic reticulum GO:0005790 IBA
    plasma membrane GO:0005886 IDA
    cell cortex GO:0005938 IDA
    junctional sarcoplasmic reticulum membrane GO:0014701 TAS
    terminal cisterna GO:0014802 ISS
    sarcoplasmic reticulum GO:0016529 ISS
    Z disc GO:0030018 IBA
    organelle membrane GO:0031090 ISS
    I band GO:0031674 IDA
    sarcoplasmic reticulum membrane GO:0033017 IBA
    sarcoplasmic reticulum membrane GO:0033017 IDA
    sarcoplasmic reticulum membrane GO:0033017 ISS
    sarcoplasmic reticulum membrane GO:0033017 TAS
    calcium channel complex GO:0034704 IBA
    sarcolemma GO:0042383 IBA
    extracellular exosome GO:0070062 HDA
    ryanodine receptor complex GO:1990425 ISS
 Experiment description of studies that identified RYR1 in sEVs
1
Experiment ID 211
MISEV standards
EM
Biophysical techniques
TSG101|Alix|EpCAM|TFRC
Enriched markers
cytochrome c|GOLGA2
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors "Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name IGROV1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 212
MISEV standards
CEM
Biophysical techniques
TSG101|Alix|EpCAM|TFRC
Enriched markers
Cytochrome C|GOLGA2
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors "Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name OVCAR-3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
3
Experiment ID 274
MISEV standards
EM
Biophysical techniques
TSG101|Alix|RAB5A|CD9|CD82|CD63|CD81
Enriched markers
AIF
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25844599    
Organism Homo sapiens
Experiment description Molecular profiling of prostate cancer derived exosomes may reveal a predictive signature for response to docetaxel.
Authors "Kharaziha P, Chioureas D, Rutishauser D, Baltatzis G, Lennartsson L, Fonseca P, Azimi A, Hultenby K, Zubarev R, Ullen A, Yachnin J, Nilsson S, Panaretakis T."
Journal name Oncotarget
Publication year 2015
Sample Prostate cancer cells
Sample name DU145 - Docetaxel resistant
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.18 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Flow cytometry
Western blotting
4
Experiment ID 63
MISEV standards
Biophysical techniques
AQP2
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19056867    
Organism Homo sapiens
Experiment description Large-scale proteomics and phosphoproteomics of urinary exosomes.
Authors "Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA"
Journal name JASN
Publication year 2009
Sample Urine
Sample name Urine - Normal
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
 Protein-protein interactions for RYR1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 TRDN 10345
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Protein-peptide Homo sapiens
Reconstituted Complex Homo sapiens
Far Western Homo sapiens
2 RYR2 6262
Affinity Capture-Western Homo sapiens
3 HOMER3 9454
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
4 SOX2  
Affinity Capture-MS Homo sapiens
5 S100A1 6271
Reconstituted Complex Homo sapiens
6 HOMER2  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
7 ANK1 286
Reconstituted Complex Homo sapiens
8 NR3C1 2908
Proximity Label-MS Homo sapiens
9 GAPDH 2597
Cross-Linking-MS (XL-MS) Homo sapiens
10 HSPA1A 3303
Cross-Linking-MS (XL-MS) Homo sapiens
11 CALM1 801
Far Western Homo sapiens
12 FKBP1A 2280
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
13 HOMER1  
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
14 DSP 1832
Cross-Linking-MS (XL-MS) Homo sapiens
15 METTL3  
Affinity Capture-MS Homo sapiens
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