Gene description for RNU6ATAC
Gene name RNA, U6atac small nuclear (U12-dependent splicing)
Gene symbol RNU6ATAC
Other names/aliases RNU6ATAC1
U6ATAC
Species Homo sapiens
 Database cross references - RNU6ATAC
ExoCarta ExoCarta_100151684
Vesiclepedia VP_100151684
Entrez Gene 100151684
HGNC 34017
MIM 601429
 RNU6ATAC identified in exosomes derived from the following tissue/cell type
Plasma 23663360    
 Gene ontology annotations for RNU6ATAC
Molecular Function
    U4atac snRNA binding GO:0030622 IEA
    pre-mRNA 5'-splice site binding GO:0030627 IEA
Biological Process
    spliceosomal tri-snRNP complex assembly GO:0000244 IEA
    mRNA 5'-splice site recognition GO:0000395 IEA
Subcellular Localization
    U6atac snRNP GO:0005691 IEA
 Experiment description of studies that identified RNU6ATAC in exosomes
1
Experiment ID 222
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule snRNA
Identification method RT-PCR
PubMed ID 23663360    
Organism Homo sapiens
Experiment description Characterization of human plasma-derived exosomal RNAs by deep sequencing
Authors "Huang X, Yuan T, Tschannen M, Sun Z, Jacob H, Du M, Liang M, Dittmar RL, Liu Y, Liang M, Kohli M, Thibodeau SN, Boardman L, Wang L"
Journal name BMC Genomics
Publication year 2013
Sample Plasma
Sample name Plasma - Normal
Isolation/purification methods Exoquick
Flotation density -
Molecules identified in the study miRNA
tRNA
snRNA
snoRNA
rRNA
piRNA
lncRNA
Methods used in the study RT-PCR
 Protein-protein interactions for RNU6ATAC
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 SART1 9092
Affinity Capture-Western Homo sapiens
2 PRPF4 9128
Affinity Capture-Western Homo sapiens
3 EFTUD2 9343
Affinity Capture-Western Homo sapiens
4 SNRNP200 23020
Affinity Capture-Western Homo sapiens
5 SNRNP40 9410
Affinity Capture-Western Homo sapiens
6 LSM2 57819
Affinity Capture-Western Homo sapiens
7 LSM4 25804
Affinity Capture-Western Homo sapiens
8 PRPF31 26121
Affinity Capture-Western Homo sapiens
9 SNRPF 6636
Affinity Capture-Western Homo sapiens
10 USP39 10713
Affinity Capture-Western Homo sapiens
11 DDX23 9416
Affinity Capture-Western Homo sapiens
View the network image/svg+xml
 Pathways in which RNU6ATAC is involved
No pathways found





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