Gene description for PADI2
Gene name peptidyl arginine deiminase, type II
Gene symbol PADI2
Other names/aliases PAD-H19
PAD2
PDI2
Species Homo sapiens
 Database cross references - PADI2
ExoCarta ExoCarta_11240
Vesiclepedia VP_11240
Entrez Gene 11240
HGNC 18341
MIM 607935
UniProt Q9Y2J8  
 PADI2 identified in sEVs derived from the following tissue/cell type
Thymus 23844026    
Urine 19056867    
 Gene ontology annotations for PADI2
Molecular Function
    protein-arginine deiminase activity GO:0004668 IDA
    calcium ion binding GO:0005509 IEA
    nuclear estrogen receptor binding GO:0030331 IPI
    protein homodimerization activity GO:0042803 IDA
    histone arginine deiminase activity GO:0140794 IBA
    histone H3R2 arginine deiminase activity GO:0140795 IEA
    histone H3R8 arginine deiminase activity GO:0140796 IEA
    histone H3R17 arginine deiminase activity GO:0140797 IEA
    histone H3R26 arginine deiminase activity GO:0140798 IDA
    histone H4R3 arginine deiminase activity GO:0140809 IEA
    histone H1R54 arginine deiminase activity GO:0140810 IEA
    histone H2AR3 arginine deiminase activity GO:0140811 IEA
Biological Process
    chromatin remodeling GO:0006338 IBA
    substantia nigra development GO:0021762 HEP
    estrogen receptor signaling pathway GO:0030520 IMP
    transcription initiation-coupled chromatin remodeling GO:0045815 IMP
    negative regulation of chemokine-mediated signaling pathway GO:0070100 IDA
    negative regulation of lymphocyte chemotaxis GO:1901624 IDA
    cellular response to leukemia inhibitory factor GO:1990830 IEA
Subcellular Localization
    euchromatin GO:0000791 IDA
    extracellular region GO:0005576 TAS
    nucleus GO:0005634 IBA
    cytoplasm GO:0005737 IBA
    cytoplasm GO:0005737 IDA
    cytosol GO:0005829 TAS
    azurophil granule lumen GO:0035578 TAS
    extracellular exosome GO:0070062 HDA
 Experiment description of studies that identified PADI2 in sEVs
1
Experiment ID 217
MISEV standards
EM
Biophysical techniques
TSG101|CD81|CD9|CD63
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors "Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 63
MISEV standards
Biophysical techniques
AQP2
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19056867    
Organism Homo sapiens
Experiment description Large-scale proteomics and phosphoproteomics of urinary exosomes.
Authors "Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA"
Journal name JASN
Publication year 2009
Sample Urine
Sample name Urine - Normal
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
 Protein-protein interactions for PADI2
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 CSH1  
Affinity Capture-MS Homo sapiens
2 KLK10 5655
Affinity Capture-MS Homo sapiens
3 TRIM24  
Affinity Capture-MS Homo sapiens
View the network image/svg+xml



Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here