Gene description for Abca1
Gene name ATP-binding cassette, sub-family A (ABC1), member 1
Gene symbol Abca1
Other names/aliases ABC-1
Abc1
Species Mus musculus
 Database cross references - Abca1
ExoCarta ExoCarta_11303
Vesiclepedia VP_11303
Entrez Gene 11303
UniProt P41233  
 Abca1 identified in sEVs derived from the following tissue/cell type
Melanoma cells 34957415    
Melanoma cells 34957415    
Melanoma cells 34957415    
 Gene ontology annotations for Abca1
Molecular Function
    signaling receptor binding GO:0005102 IEA
    signaling receptor binding GO:0005102 ISO
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    ATP binding GO:0005524 ISO
    phospholipid transporter activity GO:0005548 IDA
    phospholipid transporter activity GO:0005548 IMP
    phospholipid transporter activity GO:0005548 ISO
    high-density lipoprotein particle binding GO:0008035 IEA
    high-density lipoprotein particle binding GO:0008035 ISO
    protein transmembrane transporter activity GO:0008320 IMP
    ATP hydrolysis activity GO:0016887 IEA
    syntaxin binding GO:0019905 IEA
    syntaxin binding GO:0019905 ISO
    phosphatidylcholine binding GO:0031210 IEA
    phosphatidylcholine binding GO:0031210 ISO
    small GTPase binding GO:0031267 IEA
    small GTPase binding GO:0031267 ISO
    apolipoprotein binding GO:0034185 ISO
    apolipoprotein A-I binding GO:0034186 IEA
    apolipoprotein A-I binding GO:0034186 ISO
    apolipoprotein A-I receptor activity GO:0034188 IEA
    apolipoprotein A-I receptor activity GO:0034188 ISO
    ATPase-coupled transmembrane transporter activity GO:0042626 IBA
    ATPase-coupled transmembrane transporter activity GO:0042626 ISO
    sphingolipid floppase activity GO:0046623 IEA
    sphingolipid floppase activity GO:0046623 ISO
    ATPase binding GO:0051117 IEA
    ATPase binding GO:0051117 ISO
    phosphatidylcholine floppase activity GO:0090554 IBA
    phosphatidylcholine floppase activity GO:0090554 ISO
    phosphatidylcholine floppase activity GO:0090554 ISS
    phosphatidylserine floppase activity GO:0090556 IBA
    phosphatidylserine floppase activity GO:0090556 IEA
    phosphatidylserine floppase activity GO:0090556 ISO
    cholesterol transfer activity GO:0120020 IDA
    cholesterol transfer activity GO:0120020 IMP
    cholesterol transfer activity GO:0120020 ISO
    floppase activity GO:0140328 ISO
    floppase activity GO:0140328 ISS
    ABC-type transporter activity GO:0140359 IEA
Biological Process
    peptide secretion GO:0002790 IMP
    protein lipidation GO:0006497 IMP
    phagocytosis, engulfment GO:0006911 IMP
    lysosome organization GO:0007040 IEA
    lysosome organization GO:0007040 ISO
    G protein-coupled receptor signaling pathway GO:0007186 ISO
    adenylate cyclase-activating G protein-coupled receptor signaling pathway GO:0007189 IEA
    adenylate cyclase-activating G protein-coupled receptor signaling pathway GO:0007189 ISO
    cholesterol metabolic process GO:0008203 IDA
    cholesterol metabolic process GO:0008203 ISO
    protein secretion GO:0009306 IMP
    protein secretion GO:0009306 ISO
    positive regulation of cholesterol efflux GO:0010875 IMP
    phospholipid transport GO:0015914 ISO
    endosomal transport GO:0016197 IEA
    endosomal transport GO:0016197 ISO
    signal release GO:0023061 IMP
    signal release GO:0023061 ISO
    cholesterol transport GO:0030301 ISO
    intracellular cholesterol transport GO:0032367 IEA
    intracellular cholesterol transport GO:0032367 ISO
    regulation of Cdc42 protein signal transduction GO:0032489 IEA
    regulation of Cdc42 protein signal transduction GO:0032489 ISO
    cholesterol efflux GO:0033344 IDA
    cholesterol efflux GO:0033344 IMP
    cholesterol efflux GO:0033344 IMP
    cholesterol efflux GO:0033344 ISO
    response to vitamin B3 GO:0033552 IEA
    phospholipid efflux GO:0033700 IBA
    phospholipid efflux GO:0033700 IDA
    phospholipid efflux GO:0033700 IMP
    phospholipid efflux GO:0033700 ISO
    high-density lipoprotein particle assembly GO:0034380 IEA
    high-density lipoprotein particle assembly GO:0034380 ISO
    response to laminar fluid shear stress GO:0034616 IEA
    response to laminar fluid shear stress GO:0034616 ISO
    apolipoprotein A-I-mediated signaling pathway GO:0038027 IEA
    lipoprotein metabolic process GO:0042157 IMP
    lipoprotein biosynthetic process GO:0042158 IMP
    lipoprotein biosynthetic process GO:0042158 ISO
    cholesterol homeostasis GO:0042632 IEA
    cholesterol homeostasis GO:0042632 ISO
    reverse cholesterol transport GO:0043691 IMP
    reverse cholesterol transport GO:0043691 ISO
    phospholipid translocation GO:0045332 IMP
    phospholipid translocation GO:0045332 ISO
    establishment of localization in cell GO:0051649 IMP
    phospholipid homeostasis GO:0055091 IEA
    phospholipid homeostasis GO:0055091 ISO
    platelet dense granule organization GO:0060155 IEA
    platelet dense granule organization GO:0060155 ISO
    cellular response to lipopolysaccharide GO:0071222 IDA
    cellular response to retinoic acid GO:0071300 IDA
    cellular response to cytokine stimulus GO:0071345 IEA
    cellular response to cholesterol GO:0071397 IEA
    cellular response to high density lipoprotein particle stimulus GO:0071403 IMP
    cellular response to xenobiotic stimulus GO:0071466 IEA
    protein transmembrane transport GO:0071806 IMP
    positive regulation of high-density lipoprotein particle assembly GO:0090108 IMP
    sphingolipid translocation GO:0099039 IEA
    export across plasma membrane GO:0140115 IMP
Subcellular Localization
    endosome GO:0005768 ISO
    endosome GO:0005768 ISS
    Golgi apparatus GO:0005794 IDA
    plasma membrane GO:0005886 IDA
    plasma membrane GO:0005886 ISO
    external side of plasma membrane GO:0009897 IDA
    cell surface GO:0009986 ISO
    basolateral plasma membrane GO:0016323 IEA
    basolateral plasma membrane GO:0016323 ISO
    endocytic vesicle GO:0030139 ISO
    intracellular membrane-bounded organelle GO:0043231 IBA
    intracellular membrane-bounded organelle GO:0043231 IDA
    membrane raft GO:0045121 IEA
    membrane raft GO:0045121 ISO
    phagocytic vesicle GO:0045335 IEA
    phagocytic vesicle GO:0045335 ISO
    perinuclear region of cytoplasm GO:0048471 IEA
    perinuclear region of cytoplasm GO:0048471 ISO
    intracellular vesicle GO:0097708 ISO
 Experiment description of studies that identified Abca1 in sEVs
1
Experiment ID 1101
MISEV standards
EM
Biophysical techniques
Cd81|Cd9|Tfrc|Gapdh|Lamp1
Enriched markers
GOLGA2|CANX
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 1102
MISEV standards
EM
Biophysical techniques
Cd81|Cd9|Tfrc|Gapdh|Lamp1
Enriched markers
GOLGA2|CANX
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F10
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
Flow cytometry
3
Experiment ID 1103
MISEV standards
EM
Biophysical techniques
Cd81|Cd9|Tfrc|Gapdh|Lamp1
Enriched markers
GOLGA2|CANX
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1R2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
Flow cytometry
 Protein-protein interactions for Abca1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Sptlc1  
Affinity Capture-Western Mus musculus
Affinity Capture-Western Mus musculus
2 Usp7  
Affinity Capture-MS Mus musculus
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