Gene description for Sema4d
Gene name sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
Gene symbol Sema4d
Other names/aliases CD100
Semacl2
Semaj
Semcl2
coll-4
Species Mus musculus
 Database cross references - Sema4d
ExoCarta ExoCarta_20354
Vesiclepedia VP_20354
Entrez Gene 20354
UniProt O09126  
 Sema4d identified in sEVs derived from the following tissue/cell type
Melanoma cells 34957415    
Melanoma cells 34957415    
 Gene ontology annotations for Sema4d
Molecular Function
    transmembrane signaling receptor activity GO:0004888 ISO
    transmembrane signaling receptor activity GO:0004888 ISS
    signaling receptor binding GO:0005102 IPI
    signaling receptor binding GO:0005102 ISO
    protein binding GO:0005515 IPI
    semaphorin receptor binding GO:0030215 IBA
    semaphorin receptor binding GO:0030215 IPI
    semaphorin receptor binding GO:0030215 ISO
    signaling receptor activity GO:0038023 ISO
    neuropilin binding GO:0038191 IBA
    identical protein binding GO:0042802 ISO
    chemorepellent activity GO:0045499 IBA
    receptor ligand activity GO:0048018 IDA
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IDA
    negative regulation of transcription by RNA polymerase II GO:0000122 ISO
    neural crest cell migration GO:0001755 IBA
    positive regulation of protein phosphorylation GO:0001934 ISO
    positive regulation of protein phosphorylation GO:0001934 ISS
    negative regulation of cell adhesion GO:0007162 ISO
    negative regulation of cell adhesion GO:0007162 ISS
    axonogenesis GO:0007409 IDA
    axonogenesis GO:0007409 IGI
    axon guidance GO:0007411 IBA
    regulation of cell shape GO:0008360 ISO
    regulation of cell shape GO:0008360 ISS
    positive regulation of cell migration GO:0030335 IBA
    positive regulation of cell migration GO:0030335 IDA
    positive regulation of cell migration GO:0030335 ISO
    regulation of cell projection organization GO:0031344 ISO
    regulation of cell projection organization GO:0031344 ISS
    positive regulation of Rho protein signal transduction GO:0035025 IMP
    positive regulation of GTPase activity GO:0043547 ISO
    ossification involved in bone maturation GO:0043931 IMP
    ossification involved in bone maturation GO:0043931 ISO
    negative regulation of osteoblast differentiation GO:0045668 IMP
    positive regulation of collateral sprouting GO:0048672 ISO
    positive regulation of collateral sprouting GO:0048672 ISS
    regulation of dendrite morphogenesis GO:0048814 ISO
    regulation of dendrite morphogenesis GO:0048814 ISS
    positive regulation of peptidyl-tyrosine phosphorylation GO:0050731 IDA
    negative regulation of peptidyl-tyrosine phosphorylation GO:0050732 IDA
    positive regulation of axonogenesis GO:0050772 IDA
    positive regulation of axonogenesis GO:0050772 IGI
    negative chemotaxis GO:0050919 IBA
    positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 ISO
    positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 ISS
    regulation of synapse assembly GO:0051963 IDA
    regulation of synapse assembly GO:0051963 IMP
    bone trabecula morphogenesis GO:0061430 IMP
    leukocyte aggregation GO:0070486 ISO
    leukocyte aggregation GO:0070486 ISS
    semaphorin-plexin signaling pathway GO:0071526 IBA
    semaphorin-plexin signaling pathway GO:0071526 IMP
    semaphorin-plexin signaling pathway GO:0071526 ISO
    semaphorin-plexin signaling pathway GO:0071526 ISS
    positive regulation of inhibitory synapse assembly GO:1905704 IDA
    positive regulation of inhibitory synapse assembly GO:1905704 IMP
Subcellular Localization
    semaphorin receptor complex GO:0002116 IMP
    extracellular space GO:0005615 IBA
    extracellular space GO:0005615 IDA
    plasma membrane GO:0005886 IBA
    plasma membrane GO:0005886 ISO
    membrane GO:0016020 TAS
    postsynaptic membrane GO:0045211 IEA
    GABA-ergic synapse GO:0098982 IDA
    GABA-ergic synapse GO:0098982 IMP
 Experiment description of studies that identified Sema4d in sEVs
1
Experiment ID 1117
MISEV standards
Biophysical techniques
Cd81|Icam1
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1R2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 1118
MISEV standards
Biophysical techniques
Cd81|Icam1
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1R2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
 Protein-protein interactions for Sema4d
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Tmem173  
Proximity Label-MS Mus musculus
View the network image/svg+xml



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