Gene description for Sox6
Gene name SRY (sex determining region Y)-box 6
Gene symbol Sox6
Other names/aliases AI987981
SOX-LZ
Species Mus musculus
 Database cross references - Sox6
ExoCarta ExoCarta_20679
Vesiclepedia VP_20679
Entrez Gene 20679
UniProt P40645  
 Sox6 identified in sEVs derived from the following tissue/cell type
Mast cells 17486113    
 Gene ontology annotations for Sox6
Molecular Function
    transcription cis-regulatory region binding GO:0000976 IDA
    transcription cis-regulatory region binding GO:0000976 ISO
    transcription cis-regulatory region binding GO:0000976 ISS
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IBA
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IDA
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IMP
    DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981 IBA
    cis-regulatory region sequence-specific DNA binding GO:0000987 ISO
    DNA-binding transcription repressor activity GO:0001217 IDA
    DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001227 IMP
    DNA binding GO:0003677 IDA
    DNA-binding transcription factor activity GO:0003700 IDA
    DNA-binding transcription factor activity GO:0003700 IGI
    DNA-binding transcription factor activity GO:0003700 ISO
    protein binding GO:0005515 IPI
    protein homodimerization activity GO:0042803 ISO
    protein homodimerization activity GO:0042803 ISS
    sequence-specific DNA binding GO:0043565 IDA
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IDA
    negative regulation of transcription by RNA polymerase II GO:0000122 IMP
    negative regulation of transcription by RNA polymerase II GO:0000122 IMP
    cell morphogenesis GO:0000902 IMP
    cartilage condensation GO:0001502 IMP
    in utero embryonic development GO:0001701 IMP
    chondrocyte differentiation GO:0002062 IMP
    regulation of DNA-templated transcription GO:0006355 IDA
    regulation of transcription by RNA polymerase II GO:0006357 IBA
    central nervous system development GO:0007417 IBA
    brain development GO:0007420 ISO
    brain development GO:0007420 ISS
    post-embryonic development GO:0009791 IMP
    gene expression GO:0010467 IMP
    regulation of gene expression GO:0010468 IMP
    spinal cord oligodendrocyte cell differentiation GO:0021529 IMP
    oligodendrocyte cell fate specification GO:0021778 IMP
    hemopoiesis GO:0030097 IMP
    erythrocyte differentiation GO:0030218 IMP
    positive regulation of chondrocyte differentiation GO:0032332 IBA
    positive regulation of chondrocyte differentiation GO:0032332 IDA
    positive regulation of chondrocyte differentiation GO:0032332 ISO
    cell fate commitment GO:0045165 IBA
    cell fate commitment GO:0045165 IGI
    negative regulation of DNA-templated transcription GO:0045892 IDA
    negative regulation of DNA-templated transcription GO:0045892 IMP
    positive regulation of DNA-templated transcription GO:0045893 IDA
    positive regulation of transcription by RNA polymerase II GO:0045944 IGI
    astrocyte differentiation GO:0048708 ISO
    oligodendrocyte differentiation GO:0048709 IMP
    erythrocyte development GO:0048821 IMP
    regulation of DNA-binding transcription factor activity GO:0051090 IMP
    cartilage development GO:0051216 IDA
    cartilage development GO:0051216 IGI
    cartilage development GO:0051216 IMP
    cardiac muscle cell differentiation GO:0055007 IDA
    positive regulation of cartilage development GO:0061036 ISO
    cellular response to transforming growth factor beta stimulus GO:0071560 ISO
    negative regulation of cardiac muscle cell differentiation GO:2000726 ISO
    positive regulation of mesenchymal stem cell differentiation GO:2000741 ISO
Subcellular Localization
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IC
    nucleus GO:0005634 IDA
    nucleus GO:0005634 ISO
    nucleoplasm GO:0005654 ISO
    transcription regulator complex GO:0005667 IC
    cytoplasm GO:0005737 IEA
 Experiment description of studies that identified Sox6 in sEVs
1
Experiment ID 15
MISEV standards
EM
Biophysical techniques
CD63
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 17486113    
Organism Mus musculus
Homo sapiens
Experiment description Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Authors "Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO"
Journal name NCB
Publication year 2007
Sample Mast cells
Sample name MC9
Bone marrow-derived mast cells
HMC-1
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.11-1.21 g/mL
Molecules identified in the study Protein
mRNA
miRNA
Methods used in the study Mass spectrometry [MALDI TOF]
Western blotting
Microarray
miRCURY LNA Array
 Protein-protein interactions for Sox6
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Irf9  
Two-hybrid Mus musculus
2 Tox3  
Two-hybrid Mus musculus
3 Hltf  
Co-fractionation Mus musculus
4 Trip12  
Co-fractionation Mus musculus
View the network image/svg+xml



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