Gene description for LSM5
Gene name LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene symbol LSM5
Other names/aliases YER146W
Species Homo sapiens
 Database cross references - LSM5
ExoCarta ExoCarta_23658
Vesiclepedia VP_23658
Entrez Gene 23658
HGNC 17162
MIM 607285
UniProt Q9Y4Y9  
 LSM5 identified in exosomes derived from the following tissue/cell type
Plasma 23663360    
 Gene ontology annotations for LSM5
Molecular Function
    RNA binding GO:0003723 IBA
    protein binding GO:0005515 IPI
    protein heterodimerization activity GO:0046982 IDA
Biological Process
    mRNA splicing, via spliceosome GO:0000398 IBA
    mRNA splicing, via spliceosome GO:0000398 IDA
    mRNA splicing, via spliceosome GO:0000398 NAS
    mRNA processing GO:0006397 TAS
    mRNA catabolic process GO:0006402 IDA
    response to bacterium GO:0009617 IEA
Subcellular Localization
    nucleus GO:0005634 IDA
    nucleus GO:0005634 NAS
    nucleoplasm GO:0005654 TAS
    U6 snRNP GO:0005688 IBA
    cytoplasm GO:0005737 IDA
    cytosol GO:0005829 TAS
    U4/U6 x U5 tri-snRNP complex GO:0046540 IBA
    U4/U6 x U5 tri-snRNP complex GO:0046540 IDA
    U4/U6 x U5 tri-snRNP complex GO:0046540 IPI
    U2-type precatalytic spliceosome GO:0071005 IDA
    Lsm2-8 complex GO:0120115 IDA
    Lsm1-7-Pat1 complex GO:1990726 IBA
 Experiment description of studies that identified LSM5 in exosomes
1
Experiment ID 222
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule snRNA
Identification method RT-PCR
PubMed ID 23663360    
Organism Homo sapiens
Experiment description Characterization of human plasma-derived exosomal RNAs by deep sequencing
Authors "Huang X, Yuan T, Tschannen M, Sun Z, Jacob H, Du M, Liang M, Dittmar RL, Liu Y, Liang M, Kohli M, Thibodeau SN, Boardman L, Wang L"
Journal name BMC Genomics
Publication year 2013
Sample Plasma
Sample name Plasma - Normal
Isolation/purification methods Exoquick
Flotation density -
Molecules identified in the study miRNA
tRNA
snRNA
snoRNA
rRNA
piRNA
lncRNA
Methods used in the study RT-PCR
 Protein-protein interactions for LSM5
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 DDX23 9416
Affinity Capture-MS Homo sapiens
2 RBFOX2 23543
Two-hybrid Homo sapiens
3 BAG3 9531
Affinity Capture-Luminescence Homo sapiens
4 RIT1 6016
Negative Genetic Homo sapiens
5 HNRNPD 3184
Two-hybrid Homo sapiens
6 Bbs5  
Two-hybrid Mus musculus
7 RBM42  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
8 Nudt21 68219
Two-hybrid Mus musculus
9 LSM8 51691
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
10 PRPF4B 8899
Affinity Capture-MS Homo sapiens
11 SNRPE 6635
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
12 LARP4 113251
Two-hybrid Homo sapiens
13 LSM1 27257
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
14 NAA38  
Co-fractionation Homo sapiens
15 SNRPD2 6633
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
16 UBE3A 7337
Co-fractionation Homo sapiens
17 LSM2 57819
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
18 RMI2  
Co-fractionation Homo sapiens
19 SNRPB 6628
Affinity Capture-MS Homo sapiens
20 RDH13  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
21 PRPF6 24148
Affinity Capture-MS Homo sapiens
22 QKI 9444
Two-hybrid Homo sapiens
23 Prdx1 18477
Two-hybrid Mus musculus
24 ZNF511  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
25 Rbm14  
Two-hybrid Mus musculus
26 SPTB 6710
Co-fractionation Homo sapiens
27 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
28 LSM4 25804
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
29 TMCO6  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
30 PRPF3  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
31 SNRNP27  
Affinity Capture-MS Homo sapiens
32 MEPCE 56257
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
33 PPP1R10  
Co-fractionation Homo sapiens
34 DDIT4L  
Two-hybrid Homo sapiens
35 DDX58 23586
Affinity Capture-RNA Homo sapiens
36 NHP2L1 4809
Affinity Capture-MS Homo sapiens
37 GTF2B 2959
Co-fractionation Homo sapiens
38 SART1 9092
Affinity Capture-MS Homo sapiens
39 PRRC2B  
Two-hybrid Homo sapiens
40 TEX43  
Two-hybrid Homo sapiens
41 Tpt1 22070
Two-hybrid Mus musculus
42 Lsm3  
Two-hybrid Mus musculus
43 POLH  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
44 TCL1B  
Two-hybrid Homo sapiens
45 HAPLN3 145864
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
46 MAPK6  
Affinity Capture-MS Homo sapiens
47 LSM7  
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
48 PATL1 219988
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
49 DHX16 8449
Co-fractionation Homo sapiens
50 LSM3 27258
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
51 S100B 6285
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
52 PRPF38B 55119
Two-hybrid Homo sapiens
53 CLTA 1211
Affinity Capture-MS Homo sapiens
54 EXOSC5 56915
Two-hybrid Homo sapiens
55 SART3 9733
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
56 SNRPN 6638
Affinity Capture-MS Homo sapiens
57 LSM6 11157
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
Two-hybrid Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
58 PRPF4 9128
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
59 CPSF7 79869
Two-hybrid Homo sapiens
60 KRAS 3845
Synthetic Lethality Homo sapiens
Negative Genetic Homo sapiens
61 Gnl2  
Two-hybrid Mus musculus
62 SNRPC 6631
Affinity Capture-MS Homo sapiens
63 PLK3  
Two-hybrid Homo sapiens
64 AKAP7 9465
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
65 SNRPF 6636
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
66 MIF4GD 57409
Co-fractionation Homo sapiens
67 PRPF31 26121
Affinity Capture-MS Homo sapiens
68 Ssbp1  
Two-hybrid Mus musculus
69 CEBPA  
Protein-peptide Homo sapiens
70 TUT1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
71 SNRPD3 6634
Affinity Capture-MS Homo sapiens
72 ZGPAT  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
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