Gene description for Abca3
Gene name ATP-binding cassette, sub-family A (ABC1), member 3
Gene symbol Abca3
Other names/aliases 1810036E22Rik
ABC-C
Abc3
Species Mus musculus
 Database cross references - Abca3
ExoCarta ExoCarta_27410
Vesiclepedia VP_27410
Entrez Gene 27410
UniProt Q8R420  
 Abca3 identified in sEVs derived from the following tissue/cell type
Melanoma cells 34957415    
Melanoma cells 34957415    
Melanoma cells 34957415    
 Gene ontology annotations for Abca3
Molecular Function
    lipid transporter activity GO:0005319 IBA
    ATP binding GO:0005524 IEA
    ABC-type xenobiotic transporter activity GO:0008559 ISO
    ABC-type xenobiotic transporter activity GO:0008559 ISS
    ATP hydrolysis activity GO:0016887 ISO
    ATP hydrolysis activity GO:0016887 ISS
    ATPase-coupled transmembrane transporter activity GO:0042626 IBA
    phosphatidylcholine transfer activity GO:0120019 ISO
    phosphatidylcholine transfer activity GO:0120019 ISS
    phosphatidylcholine flippase activity GO:0140345 ISO
    phosphatidylcholine flippase activity GO:0140345 ISS
Biological Process
    transport GO:0006810 ISO
    xenobiotic transmembrane transport GO:0006855 ISO
    xenobiotic transmembrane transport GO:0006855 ISS
    lipid transport GO:0006869 IBA
    positive regulation of cholesterol efflux GO:0010875 ISO
    positive regulation of cholesterol efflux GO:0010875 ISS
    phospholipid transport GO:0015914 ISO
    phospholipid transport GO:0015914 ISS
    lung development GO:0030324 IMP
    regulation of lipid transport GO:0032368 IMP
    positive regulation of protein homooligomerization GO:0032464 IEA
    positive regulation of protein homooligomerization GO:0032464 ISO
    lipid translocation GO:0034204 IEA
    xenobiotic transport GO:0042908 ISO
    xenobiotic transport GO:0042908 ISS
    surfactant homeostasis GO:0043129 IMP
    phosphatidylcholine metabolic process GO:0046470 IMP
    phosphatidylcholine metabolic process GO:0046470 ISO
    phosphatidylcholine metabolic process GO:0046470 ISS
    phosphatidylglycerol metabolic process GO:0046471 IMP
    xenobiotic export from cell GO:0046618 ISO
    xenobiotic export from cell GO:0046618 ISS
    regulation of lipid biosynthetic process GO:0046890 IMP
    response to glucocorticoid GO:0051384 IEA
    phospholipid homeostasis GO:0055091 IMP
    organelle assembly GO:0070925 IMP
    intermembrane lipid transfer GO:0120009 IEA
    regulation of phosphatidylcholine metabolic process GO:0150172 ISO
    regulation of phosphatidylcholine metabolic process GO:0150172 ISS
    positive regulation of phospholipid efflux GO:1902995 ISO
    positive regulation of phospholipid efflux GO:1902995 ISS
    positive regulation of phospholipid transport GO:2001140 ISO
    positive regulation of phospholipid transport GO:2001140 ISS
Subcellular Localization
    lysosomal membrane GO:0005765 IEA
    late endosome GO:0005770 ISO
    late endosome GO:0005770 ISS
    plasma membrane GO:0005886 ISO
    cytoplasmic vesicle membrane GO:0030659 ISO
    multivesicular body membrane GO:0032585 IEA
    lamellar body GO:0042599 ISO
    intracellular membrane-bounded organelle GO:0043231 IBA
    alveolar lamellar body GO:0097208 ISO
    lamellar body membrane GO:0097232 ISO
    alveolar lamellar body membrane GO:0097233 IDA
    alveolar lamellar body membrane GO:0097233 ISO
 Experiment description of studies that identified Abca3 in sEVs
1
Experiment ID 1101
MISEV standards
EM
Biophysical techniques
Cd81|Cd9|Tfrc|Gapdh|Lamp1
Enriched markers
GOLGA2|CANX
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 1102
MISEV standards
EM
Biophysical techniques
Cd81|Cd9|Tfrc|Gapdh|Lamp1
Enriched markers
GOLGA2|CANX
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F10
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
Flow cytometry
3
Experiment ID 1103
MISEV standards
EM
Biophysical techniques
Cd81|Cd9|Tfrc|Gapdh|Lamp1
Enriched markers
GOLGA2|CANX
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34957415    
Organism Mus musculus
Experiment description Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism
Authors "García-Silva S, Benito-Martín A, Nogués L, Hernández-Barranco A, Mazariegos MS, Santos V, Hergueta-Redondo M, Ximénez-Embún P, Kataru RP, Lopez AA, Merino C, Sánchez-Redondo S, Graña-Castro O, Matei I, Nicolás-Avila JÁ, Torres-Ruiz R, Rodríguez-Perales S, Martínez L, Pérez-Martínez M, Mata G, Szumera-Ciećkiewicz A, Kalinowska I, Saltari A, Martínez-Gómez JM, Hogan SA, Saragovi HU, Ortega S, Garcia-Martin C, Boskovic J, Levesque MP, Rutkowski P, Hidalgo A, Muñoz J, Megías D, Mehrara BJ, Lyden D, Peinado H."
Journal name Nat Cancer
Publication year 2021
Sample Melanoma cells
Sample name B16-F1R2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
Flow cytometry
 Protein-protein interactions for Abca3
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Tmem173  
Proximity Label-MS Mus musculus
View the network image/svg+xml



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