Gene description for Vcl
Gene name vinculin
Gene symbol Vcl
Other names/aliases -
Species Rattus norvegicus
 Database cross references - Vcl
ExoCarta ExoCarta_305679
Vesiclepedia VP_305679
Entrez Gene 305679
UniProt P85972  
 Vcl identified in sEVs derived from the following tissue/cell type
Adipocytes 25998041    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
 Gene ontology annotations for Vcl
Molecular Function
    dystroglycan binding GO:0002162 IEA
    dystroglycan binding GO:0002162 ISO
    actin binding GO:0003779 ISO
    actin binding GO:0003779 ISO
    structural molecule activity GO:0005198 IEA
    beta-catenin binding GO:0008013 IBA
    small GTPase binding GO:0031267 IPI
    ubiquitin protein ligase binding GO:0031625 IEA
    ubiquitin protein ligase binding GO:0031625 ISO
    alpha-catenin binding GO:0045294 IBA
    alpha-catenin binding GO:0045294 IEA
    alpha-catenin binding GO:0045294 ISO
    actin filament binding GO:0051015 IEA
    molecular adaptor activity GO:0060090 ISO
Biological Process
    morphogenesis of an epithelium GO:0002009 IEA
    morphogenesis of an epithelium GO:0002009 ISO
    cell adhesion GO:0007155 IBA
    cell adhesion GO:0007155 IEA
    cell adhesion GO:0007155 ISO
    lamellipodium assembly GO:0030032 IEA
    lamellipodium assembly GO:0030032 ISO
    regulation of cell migration GO:0030334 IEA
    regulation of cell migration GO:0030334 ISO
    adherens junction assembly GO:0034333 IEA
    adherens junction assembly GO:0034333 ISO
    protein localization to cell surface GO:0034394 IEA
    protein localization to cell surface GO:0034394 ISO
    apical junction assembly GO:0043297 IEA
    apical junction assembly GO:0043297 ISO
    axon extension GO:0048675 IEA
    axon extension GO:0048675 ISO
    regulation of focal adhesion assembly GO:0051893 IEA
    regulation of focal adhesion assembly GO:0051893 ISO
    platelet aggregation GO:0070527 ISO
    epithelial cell-cell adhesion GO:0090136 IEA
    epithelial cell-cell adhesion GO:0090136 ISO
    regulation of establishment of endothelial barrier GO:1903140 IEA
    regulation of establishment of endothelial barrier GO:1903140 ISO
    regulation of protein localization to adherens junction GO:1904702 IEA
    regulation of protein localization to adherens junction GO:1904702 ISO
Subcellular Localization
    stress fiber GO:0001725 IDA
    podosome GO:0002102 IEA
    podosome GO:0002102 ISO
    cytoplasm GO:0005737 IBA
    cytoplasm GO:0005737 ISO
    cytoskeleton GO:0005856 IBA
    actin filament GO:0005884 IDA
    plasma membrane GO:0005886 IBA
    plasma membrane GO:0005886 ISO
    plasma membrane GO:0005886 ISS
    brush border GO:0005903 ISS
    cell-cell junction GO:0005911 ISO
    adherens junction GO:0005912 IBA
    adherens junction GO:0005912 IEA
    adherens junction GO:0005912 ISO
    zonula adherens GO:0005915 ISS
    fascia adherens GO:0005916 IEA
    fascia adherens GO:0005916 ISO
    focal adhesion GO:0005925 IBA
    focal adhesion GO:0005925 IDA
    focal adhesion GO:0005925 IEA
    focal adhesion GO:0005925 ISO
    intercalated disc GO:0014704 IDA
    actin cytoskeleton GO:0015629 ISO
    Z disc GO:0030018 IDA
    protein-containing complex GO:0032991 IEA
    protein-containing complex GO:0032991 ISO
    sarcolemma GO:0042383 IDA
    sarcolemma GO:0042383 IEA
    sarcolemma GO:0042383 ISO
    sarcolemma GO:0042383 ISS
    cell projection GO:0042995 IEA
    costamere GO:0043034 IEA
    costamere GO:0043034 ISO
    cell-cell contact zone GO:0044291 IBA
    cell-cell contact zone GO:0044291 ISO
    membrane raft GO:0045121 ISO
    podosome ring GO:0061826 IEA
    podosome ring GO:0061826 ISO
    outer dense plaque of desmosome GO:0090636 ISS
    inner dense plaque of desmosome GO:0090637 ISS
    terminal web GO:1990357 ISS
 Experiment description of studies that identified Vcl in sEVs
1
Experiment ID 225
MISEV standards
EM
Biophysical techniques
GAPDH|CD63
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25998041    
Organism Rattus norvegicus
Experiment description Proteomic Analysis of Extracellular Vesicles Released by Adipocytes of Otsuka Long-Evans Tokushima Fatty (OLETF) Rats.
Authors "Lee JE, Moon PG, Lee IK, Baek MC"
Journal name Protein J
Publication year 2015
Sample Adipocytes
Sample name Adipocytes
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
2
Experiment ID 90
MISEV standards
EM
Biophysical techniques
HSC70|HSP90|TSG101|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E"
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
3
Experiment ID 94
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
4
Experiment ID 96
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
5
Experiment ID 97
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
6
Experiment ID 98
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
7
Experiment ID 99
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [QSTAR]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
8
Experiment ID 100
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [QSTAR]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
 Protein-protein interactions for Vcl
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Sorbs1  
Affinity Capture-Western Rattus norvegicus
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