Gene description for Lims1
Gene name LIM and senescent cell antigen-like domains 1
Gene symbol Lims1
Other names/aliases Pinch1
RGD1560732
Species Rattus norvegicus
 Database cross references - Lims1
ExoCarta ExoCarta_499443
Vesiclepedia VP_499443
Entrez Gene 499443
 Lims1 identified in sEVs derived from the following tissue/cell type
Pancreatic cancer cells 20124479    
Pancreatic cancer cells 20124479    
Reticulocytes 21828046    
Reticulocytes 21828046    
 Gene ontology annotations for Lims1
Molecular Function
    zinc ion binding GO:0008270 ISO
    protein kinase binding GO:0019901 ISO
    protein domain specific binding GO:0019904 IC
    protein-containing complex binding GO:0044877 IDA
    protein-containing complex binding GO:0044877 IPI
Biological Process
    epithelial to mesenchymal transition GO:0001837 ISO
    cell-matrix adhesion GO:0007160 ISO
    establishment or maintenance of cell polarity GO:0007163 ISO
    integrin-mediated signaling pathway GO:0007229 ISO
    positive regulation of gene expression GO:0010628 ISO
    positive regulation of cell-substrate adhesion GO:0010811 ISO
    tumor necrosis factor-mediated signaling pathway GO:0033209 ISO
    chordate embryonic development GO:0043009 ISO
    positive regulation of canonical NF-kappaB signal transduction GO:0043123 ISO
    positive regulation of GTPase activity GO:0043547 ISO
    establishment of protein localization GO:0045184 ISO
    cell-cell junction organization GO:0045216 IBA
    cell-cell junction organization GO:0045216 ISO
    negative regulation of DNA-templated transcription GO:0045892 ISO
    regulation of epithelial cell proliferation GO:0050678 ISO
    positive regulation of focal adhesion assembly GO:0051894 ISO
    neural precursor cell proliferation GO:0061351 ISO
    cellular response to transforming growth factor beta stimulus GO:0071560 ISO
    hepatocyte apoptotic process GO:0097284 ISO
    cell-cell adhesion GO:0098609 IBA
    cell-cell adhesion GO:0098609 ISO
    positive regulation of substrate adhesion-dependent cell spreading GO:1900026 IBA
    positive regulation of substrate adhesion-dependent cell spreading GO:1900026 ISO
    negative regulation of hepatocyte apoptotic process GO:1903944 ISO
    negative regulation of cholangiocyte proliferation GO:1904055 ISO
    cholangiocyte proliferation GO:1990705 ISO
    negative regulation of neural precursor cell proliferation GO:2000178 ISO
    negative regulation of hepatocyte proliferation GO:2000346 ISO
    positive regulation of integrin-mediated signaling pathway GO:2001046 IBA
    positive regulation of integrin-mediated signaling pathway GO:2001046 ISO
Subcellular Localization
    cytoplasm GO:0005737 IBA
    plasma membrane GO:0005886 IEA
    cell-cell junction GO:0005911 IBA
    cell-cell junction GO:0005911 ISO
    focal adhesion GO:0005925 IBA
    focal adhesion GO:0005925 ISO
    protein-containing complex GO:0032991 IDA
    perinuclear region of cytoplasm GO:0048471 ISO
 Experiment description of studies that identified Lims1 in sEVs
1
Experiment ID 92
MISEV standards
EM
Biophysical techniques
HSP70|GAPDH|CD9|CD151
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 20124479    
Organism Rattus norvegicus
Experiment description Cell surface tetraspanin Tspan8 contributes to molecular pathways of exosome-induced endothelial cell activation.
Authors "Nazarenko I, Rana S, Baumann A, McAlear J, Hellwig A, Trendelenburg M, Lochnit G, Preissner KT, Zoller M."
Journal name CR
Publication year 2010
Sample Pancreatic cancer cells
Sample name AS
Isolation/purification methods Differential centrifugation
Sucrose density gradient
Flotation density 1.14-1.17 g/mL
Molecules identified in the study Protein
mRNA
Methods used in the study RT-PCR
Western blotting
RatRef-12 Microarray
FACS
Mass spectrometry [MALDI TOF]
2
Experiment ID 93
MISEV standards
EM
Biophysical techniques
HSP70|GAPDH|CD9|CD151
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 20124479    
Organism Rattus norvegicus
Experiment description Cell surface tetraspanin Tspan8 contributes to molecular pathways of exosome-induced endothelial cell activation.
Authors "Nazarenko I, Rana S, Baumann A, McAlear J, Hellwig A, Trendelenburg M, Lochnit G, Preissner KT, Zoller M."
Journal name CR
Publication year 2010
Sample Pancreatic cancer cells
Sample name AS-Tspan8
Isolation/purification methods Differential centrifugation
Sucrose density gradient
Flotation density 1.14-1.17 g/mL
Molecules identified in the study Protein
mRNA
Methods used in the study RT-PCR
Western blotting
3
Experiment ID 96
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
4
Experiment ID 98
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
 Protein-protein interactions for Lims1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Mib1  
Affinity Capture-MS Rattus norvegicus
View the network image/svg+xml
 Pathways in which Lims1 is involved
No pathways found





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