Gene description for Ddx6
Gene name DEAD (Asp-Glu-Ala-Asp) box helicase 6
Gene symbol Ddx6
Other names/aliases RGD1564560
Species Rattus norvegicus
 Database cross references - Ddx6
ExoCarta ExoCarta_500988
Vesiclepedia VP_500988
Entrez Gene 500988
 Ddx6 identified in sEVs derived from the following tissue/cell type
Pancreatic cancer cells 20124479    
Pancreatic cancer cells 20124479    
 Gene ontology annotations for Ddx6
Molecular Function
    RNA helicase activity GO:0003724 IEA
    mRNA binding GO:0003729 IBA
    ATP binding GO:0005524 IEA
    hydrolase activity GO:0016787 IEA
    protein domain specific binding GO:0019904 ISO
Biological Process
    spermatogenesis GO:0007283 IEP
    negative regulation of translation GO:0017148 IBA
    negative regulation of translation GO:0017148 ISO
    viral RNA genome packaging GO:0019074 ISO
    stem cell population maintenance GO:0019827 ISO
    neuron differentiation GO:0030182 ISO
    P-body assembly GO:0033962 IBA
    P-body assembly GO:0033962 ISO
    P-body assembly GO:0033962 ISO
    stress granule assembly GO:0034063 IBA
    miRNA-mediated gene silencing by inhibition of translation GO:0035278 ISO
    negative regulation of neuron differentiation GO:0045665 ISO
    spermatid differentiation GO:0048515 IEP
Subcellular Localization
    heterochromatin GO:0000792 IDA
    P-body GO:0000932 IBA
    P-body GO:0000932 ISO
    outer dense fiber GO:0001520 IDA
    nucleus GO:0005634 ISO
    cytoplasm GO:0005737 ISO
    cytosol GO:0005829 ISO
    adherens junction GO:0005912 IDA
    cytoplasmic stress granule GO:0010494 IBA
    cytoplasmic stress granule GO:0010494 ISO
    RISC complex GO:0016442 ISO
    chromatoid body GO:0033391 IDA
    cytoplasmic ribonucleoprotein granule GO:0036464 ISO
    perinuclear region of cytoplasm GO:0048471 IDA
    concave side of sperm head GO:0061830 IDA
    sperm annulus GO:0097227 IDA
 Experiment description of studies that identified Ddx6 in sEVs
1
Experiment ID 92
MISEV standards
EM
Biophysical techniques
HSP70|GAPDH|CD9|CD151
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 20124479    
Organism Rattus norvegicus
Experiment description Cell surface tetraspanin Tspan8 contributes to molecular pathways of exosome-induced endothelial cell activation.
Authors "Nazarenko I, Rana S, Baumann A, McAlear J, Hellwig A, Trendelenburg M, Lochnit G, Preissner KT, Zoller M."
Journal name CR
Publication year 2010
Sample Pancreatic cancer cells
Sample name AS
Isolation/purification methods Differential centrifugation
Sucrose density gradient
Flotation density 1.14-1.17 g/mL
Molecules identified in the study Protein
mRNA
Methods used in the study RT-PCR
Western blotting
RatRef-12 Microarray
FACS
Mass spectrometry [MALDI TOF]
2
Experiment ID 93
MISEV standards
EM
Biophysical techniques
HSP70|GAPDH|CD9|CD151
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 20124479    
Organism Rattus norvegicus
Experiment description Cell surface tetraspanin Tspan8 contributes to molecular pathways of exosome-induced endothelial cell activation.
Authors "Nazarenko I, Rana S, Baumann A, McAlear J, Hellwig A, Trendelenburg M, Lochnit G, Preissner KT, Zoller M."
Journal name CR
Publication year 2010
Sample Pancreatic cancer cells
Sample name AS-Tspan8
Isolation/purification methods Differential centrifugation
Sucrose density gradient
Flotation density 1.14-1.17 g/mL
Molecules identified in the study Protein
mRNA
Methods used in the study RT-PCR
Western blotting
 Protein-protein interactions for Ddx6
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Mib1  
Affinity Capture-MS Rattus norvegicus
View the network image/svg+xml
 Pathways in which Ddx6 is involved
No pathways found





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