Gene description for RPS3
Gene name ribosomal protein S3
Gene symbol RPS3
Other names/aliases S3
Species Homo sapiens
 Database cross references - RPS3
ExoCarta ExoCarta_6188
Vesiclepedia VP_6188
Entrez Gene 6188
HGNC 10420
MIM 600454
UniProt P23396  
 RPS3 identified in sEVs derived from the following tissue/cell type
B cells 20458337    
B cells 20458337    
B cells 20458337    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Breast cancer cells 34108659    
Breast cancer cells 34108659    
Breast cancer cells 34108659    
Breast cancer cells 34108659    
Cholangiocarcinoma cells 31054213    
Cholangiocarcinoma cells 31054213    
Chondrocytes 35931686    
Chondrocytes 35931686    
Chondrocytes 35931686    
Chondrocytes 35931686    
Colorectal cancer cells 17956143    
Colorectal cancer cells 19837982    
Colorectal cancer cells 25890246    
Colorectal cancer cells 25890246    
Colorectal cancer cells 25890246    
Colorectal cancer cells 25890246    
Colorectal cancer cells 34887515    
Embryonic kidney cells 34108659    
Embryonic kidney cells 34108659    
Embryonic kidney cells 34108659    
Foreskin fibroblasts 34108659    
Gastric cancer cells 33991177    
Gastric cancer cells 33991177    
Gastric cancer cells 33991177    
Hepatocellular carcinoma cells 26054723    
Hepatocellular carcinoma cells 26054723    
Hepatocellular carcinoma cells 26054723    
Hepatocytes 26054723    
Lymphoma cells 34108659    
Mammary cancer-associated fibroblasts 34108659    
Melanoma cells 25950383    
Melanoma cells 25950383    
Melanoma cells 25950383    
Melanoma cells 25950383    
Melanoma cells 25950383    
Melanoma cells 25950383    
Melanoma cells 25950383    
Mesenchymal stem cells Unpublished / Not applicable
Mesenchymal stem cells 36408942    
Monocytic leukemia cells 34108659    
Neuroblastoma cells 25944692    
Normal mammary epithelial cells 34108659    
Ovarian cancer cells 23333927    
Ovarian cancer cells 23333927    
Pancreatic cancer cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic duct epithalial cells 34108659    
Pancreatic duct epithalial cells 34108659    
Pluripotent stem cells 34108659    
Prostate cancer cells 25844599    
T lymphocytes 34108659    
Thymus 23844026    
 Gene ontology annotations for RPS3
Molecular Function
    RNA polymerase II transcription regulatory region sequence-specific DNA binding GO:0000977 IMP
    DNA binding GO:0003677 IDA
    damaged DNA binding GO:0003684 IDA
    RNA binding GO:0003723 HDA
    RNA binding GO:0003723 IDA
    mRNA binding GO:0003729 IDA
    structural constituent of ribosome GO:0003735 HDA
    structural constituent of ribosome GO:0003735 IBA
    structural constituent of ribosome GO:0003735 IDA
    structural constituent of ribosome GO:0003735 NAS
    DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003906 IDA
    DNA endonuclease activity GO:0004520 IDA
    protein binding GO:0005515 IPI
    microtubule binding GO:0008017 IDA
    tubulin binding GO:0015631 IDA
    DNA N-glycosylase activity GO:0019104 IDA
    DNA N-glycosylase activity GO:0019104 TAS
    enzyme binding GO:0019899 IPI
    kinase binding GO:0019900 IPI
    protein kinase binding GO:0019901 IPI
    Hsp70 protein binding GO:0030544 IDA
    oxidized purine DNA binding GO:0032357 IDA
    oxidized pyrimidine DNA binding GO:0032358 IDA
    ubiquitin-like protein conjugating enzyme binding GO:0044390 IPI
    protein-containing complex binding GO:0044877 IMP
    protein kinase A binding GO:0051018 IPI
    iron-sulfur cluster binding GO:0051536 NAS
    Hsp90 protein binding GO:0051879 IDA
    small ribosomal subunit rRNA binding GO:0070181 IDA
    supercoiled DNA binding GO:0097100 IDA
    class I DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0140078 IEA
    DNA-binding transcription factor binding GO:0140297 IPI
Biological Process
    cytoplasmic translation GO:0002181 IC
    cytoplasmic translation GO:0002181 NAS
    DNA repair GO:0006281 IMP
    base-excision repair GO:0006284 IDA
    translation GO:0006412 IC
    translation GO:0006412 NAS
    translational initiation GO:0006413 NAS
    apoptotic process GO:0006915 IEA
    DNA damage response GO:0006974 IEP
    chromosome segregation GO:0007059 IMP
    positive regulation of gene expression GO:0010628 IMP
    negative regulation of translation GO:0017148 IDA
    positive regulation of microtubule polymerization GO:0031116 IMP
    positive regulation of protein-containing complex assembly GO:0031334 IMP
    negative regulation of protein ubiquitination GO:0031397 IDA
    positive regulation of endodeoxyribonuclease activity GO:0032079 IDA
    positive regulation of interleukin-2 production GO:0032743 IMP
    cellular response to reactive oxygen species GO:0034614 IDA
    positive regulation of activated T cell proliferation GO:0042104 IMP
    regulation of apoptotic process GO:0042981 IMP
    positive regulation of JUN kinase activity GO:0043507 IMP
    negative regulation of DNA repair GO:0045738 IMP
    positive regulation of DNA repair GO:0045739 IDA
    positive regulation of T cell receptor signaling pathway GO:0050862 IMP
    positive regulation of NF-kappaB transcription factor activity GO:0051092 IGI
    positive regulation of NF-kappaB transcription factor activity GO:0051092 IMP
    spindle assembly GO:0051225 IMP
    cell division GO:0051301 IEA
    response to TNF agonist GO:0061481 IDA
    cellular response to hydrogen peroxide GO:0070301 IDA
    cellular response to tumor necrosis factor GO:0071356 IMP
    positive regulation of non-canonical NF-kappaB signal transduction GO:1901224 IDA
    positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage GO:1902231 IMP
    positive regulation of base-excision repair GO:1905053 IDA
    positive regulation of cysteine-type endopeptidase activity GO:2001056 IMP
    positive regulation of apoptotic signaling pathway GO:2001235 IBA
    positive regulation of apoptotic signaling pathway GO:2001235 IDA
Subcellular Localization
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    nucleus GO:0005634 IMP
    nucleoplasm GO:0005654 TAS
    nucleolus GO:0005730 IDA
    cytoplasm GO:0005737 IDA
    cytoplasm GO:0005737 IMP
    cytoplasm GO:0005737 NAS
    mitochondrial inner membrane GO:0005743 IDA
    mitochondrial matrix GO:0005759 IDA
    endoplasmic reticulum GO:0005783 IDA
    cytosol GO:0005829 IDA
    cytosol GO:0005829 TAS
    ribosome GO:0005840 IDA
    plasma membrane GO:0005886 IDA
    focal adhesion GO:0005925 HDA
    postsynaptic density GO:0014069 EXP
    postsynaptic density GO:0014069 IDA
    membrane GO:0016020 HDA
    cytosolic ribosome GO:0022626 IDA
    cytosolic small ribosomal subunit GO:0022627 HDA
    cytosolic small ribosomal subunit GO:0022627 IBA
    cytosolic small ribosomal subunit GO:0022627 IDA
    cytosolic small ribosomal subunit GO:0022627 NAS
    ruffle membrane GO:0032587 IDA
    extracellular exosome GO:0070062 HDA
    NF-kappaB complex GO:0071159 IDA
    mitotic spindle GO:0072686 IDA
    ribonucleoprotein complex GO:1990904 IDA
 Experiment description of studies that identified RPS3 in sEVs
1
Experiment ID 79
MISEV standards
✘ Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 20458337    
Organism Homo sapiens
Experiment description MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis - Sample 1
Authors "Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name ICB
Publication year 2010
Sample B cells
Sample name RN (HLA-DR15)
Isolation/purification methods Differential centrifugation
Sucrose density gradient
Immunobeads (MHC Class II)
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [FT-ICR]
Western blotting
2
Experiment ID 80
MISEV standards
✘ Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 20458337    
Organism Homo sapiens
Experiment description MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis -Sample 2
Authors "Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name ICB
Publication year 2010
Sample B cells
Sample name RN (HLA-DR15)
Isolation/purification methods Differential centrifugation
Sucrose density gradient
Immunobeads (MHC Class II)
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [FT-ICR]
Western blotting
3
Experiment ID 81
MISEV standards
✘ Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 20458337    
Organism Homo sapiens
Experiment description MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis - Sample 3
Authors "Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name ICB
Publication year 2010
Sample B cells
Sample name RN (HLA-DR15)
Isolation/purification methods Differential centrifugation
Sucrose density gradient
Immunobeads (MHC Class II)
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [FT-ICR]
Western blotting
4
Experiment ID 489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
5
Experiment ID 490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
6
Experiment ID 491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
7
Experiment ID 492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
8
Experiment ID 412
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX|ACTB
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MCF7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
9
Experiment ID 414
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MDA-MB-231
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
10
Experiment ID 426
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MDA-MB-231 - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
11
Experiment ID 427
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MDA-MB-231 - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
12
Experiment ID 1225
MISEV standards
✔
EM
Biophysical techniques
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 31054213    
Organism Homo sapiens
Experiment description Phosphoproteome Profiling of Isogenic Cancer Cell-Derived Exosome Reveals HSP90 as a Potential Marker for Human Cholangiocarcinoma
Authors "Weeraphan C, Phongdara A, Chaiyawat P, Diskul-Na-Ayudthaya P, Chokchaichamnankit D, Verathamjamras C, Netsirisawan P, Yingchutrakul Y, Roytrakul S, Champattanachai V, Svasti J, Srisomsap C."
Journal name Proteomics
Publication year 2019
Sample Cholangiocarcinoma cells
Sample name KKU-M213 - in-solution digestion
Isolation/purification methods Differential centrifugation
Filtration
Centrifugal ultrafiltration
Ultracentrifugation
Sucrose density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
13
Experiment ID 1226
MISEV standards
✔
EM
Biophysical techniques
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 31054213    
Organism Homo sapiens
Experiment description Phosphoproteome Profiling of Isogenic Cancer Cell-Derived Exosome Reveals HSP90 as a Potential Marker for Human Cholangiocarcinoma
Authors "Weeraphan C, Phongdara A, Chaiyawat P, Diskul-Na-Ayudthaya P, Chokchaichamnankit D, Verathamjamras C, Netsirisawan P, Yingchutrakul Y, Roytrakul S, Champattanachai V, Svasti J, Srisomsap C."
Journal name Proteomics
Publication year 2019
Sample Cholangiocarcinoma cells
Sample name KKU-M213D5 - in-solution digestion
Isolation/purification methods Differential centrifugation
Filtration
Centrifugal ultrafiltration
Ultracentrifugation
Sucrose density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
14
Experiment ID 494
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD151|CD63|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|SDCBP|TFRC|TSG101
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name Osteoarthritic cartilage
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
15
Experiment ID 496
MISEV standards
✘ Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|SDCBP|TFRC|TSG101
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name Healthy cartilage
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
16
Experiment ID 497
MISEV standards
✘ Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name T/C-28a2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
17
Experiment ID 498
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name T/C-28a2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
18
Experiment ID 20
MISEV standards
✔
EM
Biophysical techniques
✔
HSP90|CD63|CD81|LAMP1
Enriched markers
✔
GOLGA2|cytochrome c
Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 17956143    
Organism Homo sapiens
Experiment description Proteomic analysis of microvesicles derived from human colorectal cancer cells.
Authors "Choi DS, Lee JM, Park GW, Lim HW, Bang JY, Kim YK, Kwon KH, Kwon HJ, Kim KP, Gho YS"
Journal name JPR
Publication year 2007
Sample Colorectal cancer cells
Sample name HT29
Isolation/purification methods Differential centrifugation
Sucrose density gradient
Diafiltration
Flotation density 1.16 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
19
Experiment ID 21
MISEV standards
✔
EM|IEM
Biophysical techniques
✔
Alix|TSG101|HSP70|CD63
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method
Mass spectrometry   
PubMed ID 19837982    
Organism Homo sapiens
Experiment description Proteomic and bioinformatic analysis of immunoaffinity-purified exosomes derived from the human colon tumor cell line LIM1215.
Authors "Suresh Mathivanan, Justin W.E. Lim, Bow J. Tauro, Hong Ji, Robert L. Moritz and Richard J. Simpson"
Journal name MCP
Publication year 2009
Sample Colorectal cancer cells
Sample name LIM1215
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.10-1.12 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [Orbitrap]
Western blotting
20
Experiment ID 282
MISEV standards
✔
CEM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81|EpCAM
Enriched markers
✘ Negative markers
✔
DLS
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25890246    
Organism Homo sapiens
Experiment description Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.
Authors "Xu R, Greening DW, Rai A, Ji H, Simpson RJ."
Journal name Methods
Publication year 2015
Sample Colorectal cancer cells
Sample name LIM1863 - Ultracentrifugation - Rep 1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Centrifugal concentration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
21
Experiment ID 283
MISEV standards
✔
CEM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81|EpCAM
Enriched markers
✘ Negative markers
✔
DLS
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25890246    
Organism Homo sapiens
Experiment description Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.
Authors "Xu R, Greening DW, Rai A, Ji H, Simpson RJ."
Journal name Methods
Publication year 2015
Sample Colorectal cancer cells
Sample name LIM1863 - Ultracentrifugation - Rep 2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Centrifugal concentration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
22
Experiment ID 285
MISEV standards
✔
CEM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81|EpCAM
Enriched markers
✘ Negative markers
✔
DLS
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25890246    
Organism Homo sapiens
Experiment description Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.
Authors "Xu R, Greening DW, Rai A, Ji H, Simpson RJ."
Journal name Methods
Publication year 2015
Sample Colorectal cancer cells
Sample name LIM1863 - Sequential centrifugal ultrafiltration - Rep 1
Isolation/purification methods Differential centrifugation
Filtration
Sequential centrifugal ultrafiltration
Centrifugal concentration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
23
Experiment ID 286
MISEV standards
✔
CEM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81|EpCAM
Enriched markers
✘ Negative markers
✔
DLS
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25890246    
Organism Homo sapiens
Experiment description Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.
Authors "Xu R, Greening DW, Rai A, Ji H, Simpson RJ."
Journal name Methods
Publication year 2015
Sample Colorectal cancer cells
Sample name LIM1863 - Sequential centrifugal ultrafiltration - Rep 2
Isolation/purification methods Differential centrifugation
Filtration
Sequential centrifugal ultrafiltration
Centrifugal concentration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
24
Experiment ID 1203
MISEV standards
✔
EM
Biophysical techniques
✔
SDCBP|FLOT1|CD9|CD81|CD63|EPCAM|GAPDH|LAMP1|TFRC|CD151|CD82|LAMP2|RAB35|TSG101|FLOT2|RAB5B|ICAM1|RAB5A
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34887515    
Organism Homo sapiens
Experiment description Supermeres are functional extracellular nanoparticles replete with disease biomarkers and therapeutic targets
Authors "Zhang Q, Jeppesen DK, Higginbotham JN, Graves-Deal R, Trinh VQ, Ramirez MA, Sohn Y, Neininger AC, Taneja N, McKinley ET, Niitsu H, Cao Z, Evans R, Glass SE, Ray KC, Fissell WH, Hill S, Rose KL, Huh WJ, Washington MK, Ayers GD, Burnette DT, Sharma S, Rome LH, Franklin JL, Lee YA, Liu Q, Coffey RJ."
Journal name Nat Cell Biol
Publication year 2021
Sample Colorectal cancer cells
Sample name DiFi
Isolation/purification methods Differential centrifugation
Filtration
Centrifugal ultrafiltration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
miRNA
Methods used in the study Western blotting
Mass spectrometry
RNA sequencing
25
Experiment ID 407
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|CD81|SDCBP|TSG101|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
26
Experiment ID 419
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
27
Experiment ID 419
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
28
Experiment ID 420
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
29
Experiment ID 420
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
30
Experiment ID 405
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|CD81|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Foreskin fibroblasts
Sample name BJ
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
31
Experiment ID 363
MISEV standards
✘ Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 33991177    
Organism Homo sapiens
Experiment description Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors "Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name Proteomics
Publication year 2021
Sample Gastric cancer cells
Sample name MKN1 - 100K pellet
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
32
Experiment ID 364
MISEV standards
✘ Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 33991177    
Organism Homo sapiens
Experiment description Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors "Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name Proteomics
Publication year 2021
Sample Gastric cancer cells
Sample name MKN1 - 100K pellet
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
33
Experiment ID 365
MISEV standards
✘ Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 33991177    
Organism Homo sapiens
Experiment description Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors "Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name Proteomics
Publication year 2021
Sample Gastric cancer cells
Sample name MKN1 - 100K pellet
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
34
Experiment ID 234
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|HSC70|GAPDH
Enriched markers
✔
HSP90B1
Negative markers
✔
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-C3
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
35
Experiment ID 235
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|HSC70|GAPDH
Enriched markers
✔
HSP90B1
Negative markers
✔
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
36
Experiment ID 236
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|HSC70|GAPDH
Enriched markers
✔
HSP90B1
Negative markers
✔
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name MHCC97L
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
37
Experiment ID 237
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|HSC70|GAPDH
Enriched markers
✔
HSP90B1
Negative markers
✔
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocytes
Sample name MIHA
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RNA Sequencing
38
Experiment ID 417
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD63|SDCBP|LAMP1|CD9|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX|ACTB
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Lymphoma cells
Sample name Raji
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
39
Experiment ID 411
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Mammary cancer-associated fibroblasts
Sample name mCAF
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
40
Experiment ID 254
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|FLOT1|CD81
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25950383    
Organism Homo sapiens
Experiment description Proteome characterization of melanoma exosomes reveals a specific signature for metastatic cell lines
Authors "Lazar I, Clement E, Ducoux-Petit M, Denat L, Soldan V, Dauvillier S, Balor S4, Burlet-Schiltz O1, Larue L, Muller C Nieto L"
Journal name Pigment Cell Melanoma Res
Publication year 2015
Sample Melanoma cells
Sample name MNT-1
Isolation/purification methods Differential centrifugation
Unltracentrifugation
Sucrose density gradient
Flotation density 1.13 - 1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
41
Experiment ID 255
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|FLOT1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25950383    
Organism Homo sapiens
Experiment description Proteome characterization of melanoma exosomes reveals a specific signature for metastatic cell lines
Authors "Lazar I, Clement E, Ducoux-Petit M, Denat L, Soldan V, Dauvillier S, Balor S4, Burlet-Schiltz O1, Larue L, Muller C Nieto L"
Journal name Pigment Cell Melanoma Res
Publication year 2015
Sample Melanoma cells
Sample name G1
Isolation/purification methods Differential centrifugation
Unltracentrifugation
Sucrose density gradient
Flotation density 1.13 - 1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
42
Experiment ID 256
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|FLOT1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25950383    
Organism Homo sapiens
Experiment description Proteome characterization of melanoma exosomes reveals a specific signature for metastatic cell lines
Authors "Lazar I, Clement E, Ducoux-Petit M, Denat L, Soldan V, Dauvillier S, Balor S4, Burlet-Schiltz O1, Larue L, Muller C Nieto L"
Journal name Pigment Cell Melanoma Res
Publication year 2015
Sample Melanoma cells
Sample name 501mel
Isolation/purification methods Differential centrifugation
Unltracentrifugation
Sucrose density gradient
Flotation density 1.13 - 1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
43
Experiment ID 257
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|FLOT1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25950383    
Organism Homo sapiens
Experiment description Proteome characterization of melanoma exosomes reveals a specific signature for metastatic cell lines
Authors "Lazar I, Clement E, Ducoux-Petit M, Denat L, Soldan V, Dauvillier S, Balor S4, Burlet-Schiltz O1, Larue L, Muller C Nieto L"
Journal name Pigment Cell Melanoma Res
Publication year 2015
Sample Melanoma cells
Sample name Daju
Isolation/purification methods Differential centrifugation
Unltracentrifugation
Sucrose density gradient
Flotation density 1.13 - 1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
44
Experiment ID 258
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|FLOT1|CD81
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25950383    
Organism Homo sapiens
Experiment description Proteome characterization of melanoma exosomes reveals a specific signature for metastatic cell lines
Authors "Lazar I, Clement E, Ducoux-Petit M, Denat L, Soldan V, Dauvillier S, Balor S4, Burlet-Schiltz O1, Larue L, Muller C Nieto L"
Journal name Pigment Cell Melanoma Res
Publication year 2015
Sample Melanoma cells
Sample name SKMEL28
Isolation/purification methods Differential centrifugation
Unltracentrifugation
Sucrose density gradient
Flotation density 1.13 - 1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
45
Experiment ID 259
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|FLOT1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25950383    
Organism Homo sapiens
Experiment description Proteome characterization of melanoma exosomes reveals a specific signature for metastatic cell lines
Authors "Lazar I, Clement E, Ducoux-Petit M, Denat L, Soldan V, Dauvillier S, Balor S4, Burlet-Schiltz O1, Larue L, Muller C Nieto L"
Journal name Pigment Cell Melanoma Res
Publication year 2015
Sample Melanoma cells
Sample name A375M
Isolation/purification methods Differential centrifugation
Unltracentrifugation
Sucrose density gradient
Flotation density 1.13 - 1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
46
Experiment ID 260
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|FLOT1|CD81
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25950383    
Organism Homo sapiens
Experiment description Proteome characterization of melanoma exosomes reveals a specific signature for metastatic cell lines
Authors "Lazar I, Clement E, Ducoux-Petit M, Denat L, Soldan V, Dauvillier S, Balor S4, Burlet-Schiltz O1, Larue L, Muller C Nieto L"
Journal name Pigment Cell Melanoma Res
Publication year 2015
Sample Melanoma cells
Sample name 1205Lu
Isolation/purification methods Differential centrifugation
Unltracentrifugation
Sucrose density gradient
Flotation density 1.13 - 1.19 g/mL
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
47
Experiment ID 126
MISEV standards
✘ Biophysical techniques
✔
GAPDH
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry [LTQ-FT Ultra]
PubMed ID Unpublished / Not applicable
Organism Homo sapiens
Experiment description Mesenchymal Stem Cell Exosomes: The Future MSC-based Therapy?
Authors "Ruenn Chai Lai, Ronne Wee Yeh Yeo, Soon Sim Tan, Bin Zhang, Yijun Yin, Newman Siu Kwan Sze, Andre Choo, and Sai Kiang Lim"
Journal name Mesenchymal Stem Cell Therapy
Publication year 2011
Sample Mesenchymal stem cells
Sample name huES9.E1
Isolation/purification methods HPLC
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Antobody array
Mass spectrometry
48
Experiment ID 488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Homo sapiens
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Mesenchymal stem cells
Sample name UCMSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
49
Experiment ID 418
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Monocytic leukemia cells
Sample name THP-1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
50
Experiment ID 224
MISEV standards
✔
EM|AFM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81
Enriched markers
✔
GOLGA2
Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25944692    
Organism Homo sapiens
Experiment description Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes
Authors "Keerthikumar S, Gangoda L, Liem M, Fonseka P, Atukorala I, Ozcitti C, Mechler A, Adda CG, Ang CS, Mathivanan S"
Journal name Oncotarget
Publication year 2015
Sample Neuroblastoma cells
Sample name SH-SY5Y
Isolation/purification methods Differential centrifugation
Ultracentrifugation
OptiPrep density gradient
Flotation density 1.10 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
51
Experiment ID 413
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Normal mammary epithelial cells
Sample name MCF10A
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
52
Experiment ID 211
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
cytochrome c|GOLGA2
Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors "Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name IGROV1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
53
Experiment ID 212
MISEV standards
✔
CEM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
Cytochrome C|GOLGA2
Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors "Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name OVCAR-3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
54
Experiment ID 406
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35|CD81
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name BxPC3
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
55
Experiment ID 415
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name PANC-1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
56
Experiment ID 434
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name PANC-1 - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
57
Experiment ID 435
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name PANC-1 - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
58
Experiment ID 408
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|CD81|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX|ACTB
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic duct epithalial cells
Sample name HPDE
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
59
Experiment ID 409
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD63|SDCBP|LAMP1|CD9|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic duct epithalial cells
Sample name HPNE
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
60
Experiment ID 416
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pluripotent stem cells
Sample name PSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
61
Experiment ID 274
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|RAB5A|CD9|CD82|CD63|CD81
Enriched markers
✔
AIF
Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25844599    
Organism Homo sapiens
Experiment description Molecular profiling of prostate cancer derived exosomes may reveal a predictive signature for response to docetaxel.
Authors "Kharaziha P, Chioureas D, Rutishauser D, Baltatzis G, Lennartsson L, Fonseca P, Azimi A, Hultenby K, Zubarev R, Ullen A, Yachnin J, Nilsson S, Panaretakis T."
Journal name Oncotarget
Publication year 2015
Sample Prostate cancer cells
Sample name DU145 - Docetaxel resistant
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.18 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Flow cytometry
Western blotting
62
Experiment ID 410
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD63|SDCBP|LAMP1|CD9|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample T lymphocytes
Sample name Jurkat
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
63
Experiment ID 217
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|CD81|CD9|CD63
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors "Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for RPS3
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 EIF3A 8661
Co-fractionation Homo sapiens
2 RPSAP58 388524
Affinity Capture-MS Homo sapiens
3 UBL4A 8266
Affinity Capture-MS Homo sapiens
4 ZCCHC6 79670
Affinity Capture-MS Homo sapiens
5 ZBTB11  
Affinity Capture-MS Homo sapiens
6 AATF  
Affinity Capture-MS Homo sapiens
7 ZNF346  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
8 RIN3  
Affinity Capture-MS Homo sapiens
9 SKI 6497
Affinity Capture-MS Homo sapiens
10 TRIM26 7726
Affinity Capture-MS Homo sapiens
11 CSNK1A1 1452
Affinity Capture-MS Homo sapiens
12 CRK 1398
Affinity Capture-MS Homo sapiens
13 ZNF358 140467
Affinity Capture-MS Homo sapiens
14 HIST1H2BH 8345
Cross-Linking-MS (XL-MS) Homo sapiens
15 KIF20A 10112
Affinity Capture-MS Homo sapiens
16 UBC 7316
Reconstituted Complex Homo sapiens
17 CSNK2A1 1457
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-MS Homo sapiens
18 VHL  
Affinity Capture-MS Homo sapiens
19 MID1 4281
Affinity Capture-Western Homo sapiens
20 ACTB 60
Co-fractionation Homo sapiens
21 SOX2  
Affinity Capture-MS Homo sapiens
22 EFNA3  
Affinity Capture-MS Homo sapiens
23 EIF3CL 728689
Co-fractionation Homo sapiens
24 HP1BP3 50809
Affinity Capture-MS Homo sapiens
25 CHAF1A  
Affinity Capture-MS Homo sapiens
26 KIF23 9493
Affinity Capture-MS Homo sapiens
27 NDRG1 10397
Affinity Capture-MS Homo sapiens
28 DEFA5  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
29 METAP2 10988
Affinity Capture-MS Homo sapiens
30 ZFP91 80829
Affinity Capture-MS Homo sapiens
31 BHLHA15  
Affinity Capture-MS Homo sapiens
32 HSPH1 10808
Cross-Linking-MS (XL-MS) Homo sapiens
33 FBL 2091
Co-fractionation Homo sapiens
34 RPS9 6203
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
35 GSPT1 2935
Affinity Capture-MS Homo sapiens
36 EIF3E 3646
Co-fractionation Homo sapiens
37 DYNLL1 8655
Co-fractionation Homo sapiens
38 EXOSC4 54512
Affinity Capture-MS Homo sapiens
39 SFN 2810
Affinity Capture-MS Homo sapiens
40 MECP2 4204
Affinity Capture-MS Homo sapiens
41 AIMP2 7965
Affinity Capture-MS Homo sapiens
42 ARIH2 10425
Affinity Capture-MS Homo sapiens
43 WBP2 23558
Reconstituted Complex Homo sapiens
44 RPS11 6205
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
45 SREK1 140890
Affinity Capture-MS Homo sapiens
46 RPL19 6143
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
47 KIF14 9928
Affinity Capture-MS Homo sapiens
48 EMC9  
Affinity Capture-MS Homo sapiens
49 UNK  
Affinity Capture-RNA Homo sapiens
50 HEXIM1 10614
Affinity Capture-MS Homo sapiens
51 AURKA 6790
Affinity Capture-MS Homo sapiens
52 TCP1 6950
Co-fractionation Homo sapiens
53 NEUROG3  
Affinity Capture-MS Homo sapiens
54 TXNL4B  
Affinity Capture-Western Homo sapiens
55 CRY1  
Affinity Capture-MS Homo sapiens
56 MEPCE 56257
Affinity Capture-MS Homo sapiens
57 HIST1H2AG 8969
Cross-Linking-MS (XL-MS) Homo sapiens
Affinity Capture-MS Homo sapiens
58 YBX2 51087
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
59 TUFM 7284
Co-fractionation Homo sapiens
60 PURG  
Affinity Capture-MS Homo sapiens
61 FOLH1 2346
Two-hybrid Homo sapiens
62 HIST1H2AM 8336
Affinity Capture-MS Homo sapiens
63 RPL18A 6142
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
64 ESRRB  
Affinity Capture-MS Homo sapiens
65 PABPC1 26986
Co-fractionation Homo sapiens
66 Srp72  
Affinity Capture-MS Mus musculus
67 YWHAE 7531
Affinity Capture-MS Homo sapiens
68 SRBD1  
Affinity Capture-MS Homo sapiens
69 ACTN4 81
Co-fractionation Homo sapiens
70 OGT 8473
Reconstituted Complex Homo sapiens
71 RPL31 6160
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
72 SYNCRIP 10492
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
73 NOS2  
Affinity Capture-MS Homo sapiens
74 ASCC2 84164
Affinity Capture-MS Homo sapiens
75 YWHAQ 10971
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
76 Mapk13  
Affinity Capture-MS Mus musculus
77 HECTD1 25831
Affinity Capture-Western Homo sapiens
78 CUL2 8453
Affinity Capture-MS Homo sapiens
79 C3orf17  
Affinity Capture-MS Homo sapiens
80 SND1 27044
Co-fractionation Homo sapiens
81 SEC61B 10952
Affinity Capture-MS Homo sapiens
82 SLC25A5 292
Co-fractionation Homo sapiens
83 ANLN 54443
Affinity Capture-MS Homo sapiens
84 EIF3G 8666
Affinity Capture-MS Homo sapiens
85 HIST1H2AD 3013
Co-fractionation Homo sapiens
86 HSPA5 3309
Co-fractionation Homo sapiens
87 RBM39 9584
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
88 ABT1 29777
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
89 MRPS12  
Co-fractionation Homo sapiens
90 MUS81  
Synthetic Growth Defect Homo sapiens
91 AHCYL1 10768
Co-fractionation Homo sapiens
92 LXN 56925
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
93 YBX1 4904
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
94 ZNF624 57547
Affinity Capture-MS Homo sapiens
95 CUL3 8452
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
96 EPRS 2058
Co-fractionation Homo sapiens
97 WIBG 84305
Co-fractionation Homo sapiens
98 FN1 2335
Affinity Capture-MS Homo sapiens
99 YTHDC1  
Affinity Capture-MS Homo sapiens
100 HIST1H1B 3009
Affinity Capture-MS Homo sapiens
101 IGF2BP3 10643
Affinity Capture-MS Homo sapiens
102 RPL17 6139
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
103 RPA3 6119
Proximity Label-MS Homo sapiens
104 LTV1  
Two-hybrid Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Affinity Capture-MS Homo sapiens
105 RPL35A 6165
Co-fractionation Homo sapiens
106 HSPA1A 3303
Co-fractionation Homo sapiens
107 HSPA4 3308
Affinity Capture-Western Homo sapiens
108 HIST1H1A 3024
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
109 PATZ1  
Affinity Capture-MS Homo sapiens
110 Rpl35 66489
Affinity Capture-MS Mus musculus
111 GNL3 26354
Co-fractionation Homo sapiens
112 DDX55  
Affinity Capture-MS Homo sapiens
113 NGDN  
Affinity Capture-MS Homo sapiens
114 RPS16 6217
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
115 U2SURP 23350
Affinity Capture-MS Homo sapiens
116 METTL14  
Affinity Capture-MS Homo sapiens
117 RELA 5970
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
118 NUDT21 11051
Co-fractionation Homo sapiens
119 RPS27A 6233
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
120 PRDM10  
Affinity Capture-MS Homo sapiens
121 TUBGCP2 10844
Affinity Capture-MS Homo sapiens
122 WDR77 79084
Affinity Capture-MS Homo sapiens
123 RRS1 23212
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
124 APOBEC3D  
Affinity Capture-MS Homo sapiens
125 SRSF12  
Affinity Capture-MS Homo sapiens
126 TUBGCP3 10426
Affinity Capture-MS Homo sapiens
127 HSP90AA1 3320
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
128 H2AFB3  
Affinity Capture-MS Homo sapiens
129 ZEB1  
Affinity Capture-MS Homo sapiens
130 KRR1 11103
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
131 LARP7 51574
Affinity Capture-MS Homo sapiens
132 NEIL1  
Affinity Capture-MS Homo sapiens
133 RPS24 6229
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
134 NCL 4691
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
135 HNRNPL 3191
Co-fractionation Homo sapiens
136 EIF4B 1975
Affinity Capture-MS Homo sapiens
137 ATG4B 23192
Affinity Capture-MS Homo sapiens
138 ZNF768 79724
Affinity Capture-MS Homo sapiens
139 CLTA 1211
Affinity Capture-MS Homo sapiens
140 FAM50A 9130
Cross-Linking-MS (XL-MS) Homo sapiens
141 ACO2 50
Affinity Capture-MS Homo sapiens
142 CUL7 9820
Affinity Capture-MS Homo sapiens
143 PURA 5813
Affinity Capture-MS Homo sapiens
144 H1FOO 132243
Affinity Capture-MS Homo sapiens
145 IMP4  
Affinity Capture-MS Homo sapiens
146 PSMA6 5687
Co-fractionation Homo sapiens
147 HIST1H2BC 8347
Cross-Linking-MS (XL-MS) Homo sapiens
148 H1FNT  
Affinity Capture-MS Homo sapiens
149 NCBP1 4686
Co-fractionation Homo sapiens
150 SPRTN  
Affinity Capture-MS Homo sapiens
151 EIF2S3 1968
Affinity Capture-MS Homo sapiens
152 RPS17 6218
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
153 TARDBP 23435
Affinity Capture-MS Homo sapiens
154 BTF3 689
Affinity Capture-MS Homo sapiens
155 NOP56 10528
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
156 CAPN8 388743
Affinity Capture-MS Homo sapiens
157 PPAN-P2RY11  
Affinity Capture-MS Homo sapiens
158 RPL14 9045
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
159 RPL12 6136
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
160 CAND1 55832
Affinity Capture-MS Homo sapiens
161 RSBN1  
Affinity Capture-MS Homo sapiens
162 PWP2 5822
Affinity Capture-MS Homo sapiens
163 MPHOSPH10 10199
Affinity Capture-MS Homo sapiens
164 RPS18 6222
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
165 PRR11  
Affinity Capture-MS Homo sapiens
166 B3GNT2 10678
Affinity Capture-MS Homo sapiens
167 G3BP2 9908
Affinity Capture-MS Homo sapiens
168 RRP12 23223
Affinity Capture-MS Homo sapiens
169 PRC1 9055
Affinity Capture-MS Homo sapiens
170 NPM1 4869
Affinity Capture-MS Homo sapiens
171 FGF17  
Affinity Capture-MS Homo sapiens
172 KRI1  
Affinity Capture-MS Homo sapiens
173 HELZ2  
Affinity Capture-MS Homo sapiens
174 RPN2 6185
Cross-Linking-MS (XL-MS) Homo sapiens
175 VCAM1 7412
Affinity Capture-MS Homo sapiens
176 DDX6 1656
Affinity Capture-MS Homo sapiens
177 Eif3a 13669
Affinity Capture-MS Mus musculus
178 CUL1 8454
Affinity Capture-MS Homo sapiens
179 RBM42  
Affinity Capture-MS Homo sapiens
180 USP7 7874
Affinity Capture-Western Homo sapiens
181 RRP7A 27341
Affinity Capture-MS Homo sapiens
182 DHX36 170506
Affinity Capture-MS Homo sapiens
183 RPL10L 140801
Co-fractionation Homo sapiens
184 ZCRB1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
185 CCT2 10576
Reconstituted Complex Homo sapiens
186 Nup188  
Affinity Capture-MS Mus musculus
187 HNRNPA0 10949
Co-fractionation Homo sapiens
188 DDX21 9188
Affinity Capture-MS Homo sapiens
189 THAP3  
Affinity Capture-MS Homo sapiens
190 RPL4 6124
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
191 DRG1 4733
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
192 MSX2  
Affinity Capture-MS Homo sapiens
193 GLE1 2733
Affinity Capture-MS Homo sapiens
194 ZBTB48  
Affinity Capture-MS Homo sapiens
195 VRK1 7443
Affinity Capture-MS Homo sapiens
196 CCNB1 891
Affinity Capture-MS Homo sapiens
197 DDX10  
Affinity Capture-MS Homo sapiens
198 NAA35 60560
Co-fractionation Homo sapiens
199 CDK13 8621
Affinity Capture-MS Homo sapiens
200 BEND7 222389
Affinity Capture-MS Homo sapiens
201 GAPDH 2597
Co-fractionation Homo sapiens
202 MRPL3  
Co-fractionation Homo sapiens
203 Bag2  
Affinity Capture-MS Mus musculus
204 LYAR 55646
Affinity Capture-MS Homo sapiens
205 MAGOH 4116
Affinity Capture-MS Homo sapiens
206 RPLP0 6175
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
207 RPLP0P6 220717
Co-fractionation Homo sapiens
208 TRIM31  
Affinity Capture-MS Homo sapiens
209 Ksr1  
Affinity Capture-MS Mus musculus
210 RAD21 5885
Affinity Capture-Western Homo sapiens
211 LOC101929876 101929876
Co-fractionation Homo sapiens
212 UBXN6 80700
Affinity Capture-MS Homo sapiens
213 RSL1D1 26156
Affinity Capture-MS Homo sapiens
214 FGFBP1 9982
Affinity Capture-MS Homo sapiens
215 HNRNPD 3184
Cross-Linking-MS (XL-MS) Homo sapiens
Co-fractionation Homo sapiens
216 RPL32 6161
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
217 ATP6V0D2 245972
Two-hybrid Homo sapiens
218 RPS2 6187
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
219 EMC8 10328
Affinity Capture-MS Homo sapiens
220 XPO1 7514
Affinity Capture-MS Homo sapiens
221 RC3H2  
Affinity Capture-MS Homo sapiens
222 ZBTB24  
Affinity Capture-MS Homo sapiens
223 SRSF5 6430
Affinity Capture-MS Homo sapiens
224 EGFR 1956
Affinity Capture-MS Homo sapiens
Negative Genetic Homo sapiens
225 LARS 51520
Affinity Capture-MS Homo sapiens
226 RPS27 6232
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
227 CDK2 1017
Affinity Capture-MS Homo sapiens
228 CEP250 11190
Affinity Capture-MS Homo sapiens
229 TPM1 7168
Co-fractionation Homo sapiens
230 PPP2R1A 5518
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
231 BAG1 573
Affinity Capture-MS Homo sapiens
232 ZNF92  
Affinity Capture-MS Homo sapiens
233 CSNK2A2 1459
Affinity Capture-MS Homo sapiens
234 GZF1  
Affinity Capture-MS Homo sapiens
235 SART3 9733
Affinity Capture-MS Homo sapiens
236 RPL23A 6147
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
237 DDRGK1 65992
Affinity Capture-MS Homo sapiens
238 H2AFB2  
Affinity Capture-MS Homo sapiens
239 CCDC140  
Affinity Capture-MS Homo sapiens
240 HIST1H1T 3010
Affinity Capture-MS Homo sapiens
241 RPL26 6154
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
242 LARP4 113251
Co-fractionation Homo sapiens
243 HUWE1 10075
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
244 RPL13 6137
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
245 SPOP  
Affinity Capture-MS Homo sapiens
246 TRAF2 7186
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
247 PDGFB  
Affinity Capture-MS Homo sapiens
248 ILF3 3609
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-RNA Homo sapiens
Co-fractionation Homo sapiens
249 TP53 7157
FRET Homo sapiens
250 FOLR1 2348
Affinity Capture-MS Homo sapiens
251 RPS12 6206
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
252 RPS4X 6191
Reconstituted Complex Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
253 RPS10P5 93144
Co-fractionation Homo sapiens
254 CAPRIN1 4076
Affinity Capture-MS Homo sapiens
255 RNF20 56254
Affinity Capture-MS Homo sapiens
256 RPS5 6193
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
257 NIFK 84365
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
258 ESR1  
Affinity Capture-MS Homo sapiens
259 KHDRBS2  
Affinity Capture-MS Homo sapiens
260 BCL2L1 598
Affinity Capture-MS Homo sapiens
261 C16orf72 29035
Affinity Capture-MS Homo sapiens
262 YBX3 8531
Affinity Capture-MS Homo sapiens
263 RPL7A 6130
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
264 SLC9A3R1 9368
Co-fractionation Homo sapiens
265 KRAS 3845
Synthetic Lethality Homo sapiens
266 MYC  
Affinity Capture-MS Homo sapiens
267 PRMT1 3276
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
268 PRKRIR  
Affinity Capture-MS Homo sapiens
269 CUL4A 8451
Affinity Capture-MS Homo sapiens
270 ZNF668  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
271 UBE2H 7328
Affinity Capture-MS Homo sapiens
272 RPL26L1 51121
Affinity Capture-MS Homo sapiens
273 ZSCAN25  
Affinity Capture-MS Homo sapiens
274 MARCKS 4082
Proximity Label-MS Homo sapiens
275 PARD3 56288
Affinity Capture-MS Homo sapiens
276 EPB41L5 57669
Affinity Capture-MS Homo sapiens
277 LARP1B 55132
Affinity Capture-MS Homo sapiens
278 RPS19 6223
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
279 BYSL 705
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
280 SSB 6741
Co-fractionation Homo sapiens
281 HNRNPR 10236
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
282 RPS6KB2  
Affinity Capture-MS Homo sapiens
283 FAU 2197
Co-fractionation Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
284 ATG13 9776
Affinity Capture-MS Homo sapiens
285 ISM2  
Affinity Capture-MS Homo sapiens
286 CAPZB 832
Affinity Capture-MS Homo sapiens
287 RPL10A 4736
Co-fractionation Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Co-fractionation Homo sapiens
288 HNRNPAB 3182
Co-fractionation Homo sapiens
289 LLPH  
Affinity Capture-MS Homo sapiens
290 MCM2 4171
Affinity Capture-MS Homo sapiens
291 ZNF638 27332
Affinity Capture-MS Homo sapiens
292 EIF3B 8662
Affinity Capture-MS Homo sapiens
293 CDK12 51755
Affinity Capture-MS Homo sapiens
294 MCTS1 28985
Co-fractionation Homo sapiens
295 SRP14 6727
Affinity Capture-MS Homo sapiens
296 HIST2H2AC 8338
Affinity Capture-MS Homo sapiens
297 ITGA4 3676
Affinity Capture-MS Homo sapiens
298 SLX4  
Affinity Capture-MS Homo sapiens
299 RPL29 6159
Co-fractionation Homo sapiens
300 CALR 811
Co-fractionation Homo sapiens
301 TFCP2 7024
Affinity Capture-MS Homo sapiens
302 CYLD  
Affinity Capture-MS Homo sapiens
303 PABPC4 8761
Co-fractionation Homo sapiens
304 RBM8A 9939
Affinity Capture-MS Homo sapiens
305 RBM19 9904
Affinity Capture-MS Homo sapiens
306 HSPA8 3312
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
307 FOXP1 27086
Protein-RNA Homo sapiens
308 LIN28A  
Affinity Capture-MS Homo sapiens
309 INSIG2  
Affinity Capture-MS Homo sapiens
310 NF2 4771
Affinity Capture-MS Homo sapiens
311 RPL27 6155
Co-fractionation Homo sapiens
312 ATP5A1 498
Co-fractionation Homo sapiens
313 SCAF1  
Affinity Capture-MS Homo sapiens
314 GJA1 2697
Affinity Capture-MS Homo sapiens
315 RPL9 6133
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
316 CUL4B 8450
Affinity Capture-MS Homo sapiens
317 PARK2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
318 IGF1R 3480
Affinity Capture-MS Homo sapiens
319 COPE 11316
Affinity Capture-MS Homo sapiens
320 RPS10 6204
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
321 TUBGCP4 27229
Affinity Capture-MS Homo sapiens
322 PNO1 56902
Co-fractionation Homo sapiens
323 RPL5 6125
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
324 ZCCHC17  
Affinity Capture-MS Homo sapiens
325 CHMP4B 128866
Affinity Capture-MS Homo sapiens
326 NTRK1 4914
Affinity Capture-MS Homo sapiens
327 HIST1H1E 3008
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
328 RPL36 25873
Co-fractionation Homo sapiens
329 Ccdc9  
Affinity Capture-MS Mus musculus
330 RPLP1 6176
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
331 DHX9 1660
Co-fractionation Homo sapiens
332 ENY2 56943
Affinity Capture-MS Homo sapiens
333 YAP1 10413
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
334 MYBBP1A 10514
Co-fractionation Homo sapiens
335 DNTTIP2  
Affinity Capture-MS Homo sapiens
336 PURB 5814
Affinity Capture-MS Homo sapiens
337 RBM10  
Affinity Capture-MS Homo sapiens
338 RPL11 6135
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
339 LARP1 23367
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
340 POLG2  
Affinity Capture-MS Homo sapiens
341 TRIM21 6737
Affinity Capture-MS Homo sapiens
342 CKAP5 9793
Cross-Linking-MS (XL-MS) Homo sapiens
343 SPATA31D1  
Cross-Linking-MS (XL-MS) Homo sapiens
344 EFNA4  
Affinity Capture-MS Homo sapiens
345 TNFAIP8L1  
Affinity Capture-MS Homo sapiens
346 FGF8  
Affinity Capture-MS Homo sapiens
347 CDC73  
Affinity Capture-MS Homo sapiens
348 CHERP 10523
Affinity Capture-MS Homo sapiens
349 ECT2 1894
Affinity Capture-MS Homo sapiens
350 NFKBIA  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
351 ZFR 51663
Affinity Capture-MS Homo sapiens
352 DCAF13 25879
Affinity Capture-MS Homo sapiens
353 RPL21 6144
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
354 ZC3H8  
Affinity Capture-MS Homo sapiens
355 HNRNPA1 3178
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
356 RIOK3 8780
Affinity Capture-MS Homo sapiens
357 PDCD11 22984
Affinity Capture-MS Homo sapiens
358 TROVE2 6738
Co-fractionation Homo sapiens
359 ZNF777  
Affinity Capture-MS Homo sapiens
360 PRR3  
Affinity Capture-MS Homo sapiens
361 NCAPH 23397
Affinity Capture-MS Homo sapiens
362 CBX6  
Affinity Capture-MS Homo sapiens
363 PSPC1 55269
Affinity Capture-MS Homo sapiens
364 RPS13 6207
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
365 HIST1H1C 3006
Affinity Capture-MS Homo sapiens
366 RPS14 6208
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
367 NHP2L1 4809
Co-fractionation Homo sapiens
368 PIK3CA 5290
Affinity Capture-MS Homo sapiens
369 RPL22 6146
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
370 TOE1 114034
Affinity Capture-MS Homo sapiens
371 PPP6C 5537
Affinity Capture-MS Homo sapiens
372 HDLBP 3069
Affinity Capture-MS Homo sapiens
373 RPL18 6141
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
374 NSRP1  
Co-fractionation Homo sapiens
375 Eif3e 16341
Affinity Capture-MS Mus musculus
376 TSR1 55720
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
377 UBA52 7311
Co-fractionation Homo sapiens
378 RBM17 84991
Affinity Capture-MS Homo sapiens
379 SUMO1 7341
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
380 ZNF574  
Affinity Capture-MS Homo sapiens
381 AHSA1 10598
Affinity Capture-MS Homo sapiens
382 RPL37 6167
Co-fractionation Homo sapiens
383 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
384 CDC20 991
Affinity Capture-MS Homo sapiens
385 RPS25 6230
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
386 RPL6 6128
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
387 PRDM15  
Affinity Capture-MS Homo sapiens
388 RPS21 6227
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
389 DDX3X 1654
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
390 ZNF445  
Affinity Capture-MS Homo sapiens
391 ZNF169 169841
Affinity Capture-MS Homo sapiens
392 EFNA1  
Affinity Capture-MS Homo sapiens
393 G3BP1 10146
Affinity Capture-MS Homo sapiens
394 ZNF791  
Affinity Capture-MS Homo sapiens
395 HDAC5 10014
Affinity Capture-MS Homo sapiens
396 RPL34 6164
Co-fractionation Homo sapiens
397 PDZD8 118987
Affinity Capture-MS Homo sapiens
398 UFL1 23376
Affinity Capture-MS Homo sapiens
399 DDIT3 1649
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
PCA Homo sapiens
400 RPL38 6169
Co-fractionation Homo sapiens
401 NEDD1 121441
Affinity Capture-MS Homo sapiens
402 RPS7 6201
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
403 RPL8 6132
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
404 RPL28 6158
Co-fractionation Homo sapiens
405 RPS27L 51065
Co-fractionation Homo sapiens
406 SERBP1 26135
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
407 AR 367
Affinity Capture-MS Homo sapiens
408 RPL36AL 6166
Affinity Capture-MS Homo sapiens
409 RC3H1 149041
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
410 ATXN3 4287
Affinity Capture-MS Homo sapiens
411 NUCKS1 64710
Affinity Capture-MS Homo sapiens
412 DYNLT3 6990
Co-fractionation Homo sapiens
413 HIST1H2AE 3012
Affinity Capture-MS Homo sapiens
414 EIF5 1983
Affinity Capture-MS Homo sapiens
415 HNRNPA2B1 3181
Co-fractionation Homo sapiens
416 GNL2 29889
Affinity Capture-MS Homo sapiens
417 RPSA 3921
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
418 SRP19 6728
Affinity Capture-MS Homo sapiens
419 RIT1 6016
Negative Genetic Homo sapiens
420 RSBN1L  
Affinity Capture-MS Homo sapiens
421 COIL  
Proximity Label-MS Homo sapiens
422 RPS3A 6189
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
423 BCLAF1 9774
Co-fractionation Homo sapiens
424 RPL30 6156
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
425 YTHDF1 54915
Affinity Capture-MS Homo sapiens
426 HIST1H1D 3007
Affinity Capture-MS Homo sapiens
427 RPL13A 23521
Co-fractionation Homo sapiens
428 RPL37A 6168
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
429 DHX8 1659
Affinity Capture-MS Homo sapiens
430 RPL10 6134
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
431 RPL15 6138
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
432 SRFBP1  
Affinity Capture-MS Homo sapiens
433 DHX57 90957
Affinity Capture-MS Homo sapiens
434 ILF2 3608
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
435 USP36  
Affinity Capture-MS Homo sapiens
436 KIAA1429 25962
Affinity Capture-MS Homo sapiens
437 TOP2A 7153
Affinity Capture-MS Homo sapiens
438 RPS20 6224
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Proximity Label-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
439 TGFB1 7040
Affinity Capture-MS Homo sapiens
440 PCK1 5105
Affinity Capture-MS Homo sapiens
441 TSNAX 7257
Affinity Capture-MS Homo sapiens
442 MRPL23 6150
Co-fractionation Homo sapiens
443 COPS5 10987
Affinity Capture-MS Homo sapiens
444 RPL24 6152
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
445 PSMD9 5715
Affinity Capture-MS Homo sapiens
446 USP42  
Affinity Capture-MS Homo sapiens
447 RPS8 6202
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
448 STAU2 27067
Affinity Capture-MS Homo sapiens
449 EED  
Affinity Capture-MS Homo sapiens
450 SRP68 6730
Affinity Capture-MS Homo sapiens
451 CEP57  
Affinity Capture-MS Homo sapiens
452 DFNA5 1687
Affinity Capture-MS Homo sapiens
453 NME2 4831
Co-fractionation Homo sapiens
454 Eif3i 54709
Affinity Capture-MS Mus musculus
455 MYCN  
Affinity Capture-MS Homo sapiens
456 CHD3 1107
Affinity Capture-MS Homo sapiens
457 ADSS 159
Affinity Capture-MS Homo sapiens
458 CTCF  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
459 RPS26 6231
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
460 RPS23 6228
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
461 FARS2 10667
Affinity Capture-MS Homo sapiens
462 SRP9 6726
Affinity Capture-MS Homo sapiens
463 ZKSCAN8  
Affinity Capture-MS Homo sapiens
464 RB1CC1 9821
Affinity Capture-MS Homo sapiens
465 UBB 7314
Cross-Linking-MS (XL-MS) Homo sapiens
466 STAU1 6780
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
467 SRSF6 6431
Affinity Capture-MS Homo sapiens
468 VCP 7415
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
469 IFI16 3428
Affinity Capture-MS Homo sapiens
470 RPL27A 6157
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
471 CRY2  
Affinity Capture-MS Homo sapiens
472 PABPN1 8106
Co-fractionation Homo sapiens
473 BTK 695
Affinity Capture-MS Homo sapiens
474 RPS15A 6210
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
475 FGF13  
Affinity Capture-MS Homo sapiens
476 DAXX  
Affinity Capture-MS Homo sapiens
477 MAT2A 4144
Co-fractionation Homo sapiens
478 DKK3 27122
Affinity Capture-MS Homo sapiens
479 GAN 8139
Affinity Capture-MS Homo sapiens
480 RBM5  
Affinity Capture-MS Homo sapiens
481 ZNF316  
Affinity Capture-MS Homo sapiens
482 ASCC3 10973
Affinity Capture-MS Homo sapiens
483 BMS1  
Affinity Capture-MS Homo sapiens
484 HSF1  
Co-fractionation Homo sapiens
485 RPLP2 6181
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
486 FANCD2  
Affinity Capture-MS Homo sapiens
487 RPL23 9349
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
488 EIF4G1 1981
Co-fractionation Homo sapiens
489 DNAJC2 27000
Affinity Capture-MS Homo sapiens
490 RPL35 11224
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Co-fractionation Homo sapiens
491 NAT10 55226
Affinity Capture-MS Homo sapiens
492 RLIM 51132
Affinity Capture-MS Homo sapiens
493 SRSF1 6426
Affinity Capture-MS Homo sapiens
494 RPS6 6194
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
495 RPL3 6122
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
496 RNF138  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
497 NAP1L1 4673
Co-fractionation Homo sapiens
498 RPL7 6129
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
499 NXF1 10482
Affinity Capture-RNA Homo sapiens
500 AURKB 9212
Affinity Capture-MS Homo sapiens
501 MAPK6  
Cross-Linking-MS (XL-MS) Homo sapiens
502 IL7R  
Protein-RNA Homo sapiens
503 FBXO6 26270
Affinity Capture-MS Homo sapiens
504 HIST1H2BA 255626
Cross-Linking-MS (XL-MS) Homo sapiens
505 INO80B 83444
Affinity Capture-MS Homo sapiens
506 NFKB1 4790
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
507 SCD 6319
Co-fractionation Homo sapiens
508 RPS29 6235
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Co-fractionation Homo sapiens
509 BMP4 652
Affinity Capture-MS Homo sapiens
510 NOL6 65083
Affinity Capture-MS Homo sapiens
511 C9orf72  
Affinity Capture-MS Homo sapiens
512 MDM2  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
FRET Homo sapiens
513 CCDC8  
Affinity Capture-MS Homo sapiens
514 TRIM71  
Affinity Capture-MS Homo sapiens
515 H2AFX 3014
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
516 Cbx1  
Affinity Capture-MS Mus musculus
517 YTHDC2 64848
Affinity Capture-MS Homo sapiens
518 ARRB2 409
Affinity Capture-MS Homo sapiens
519 ZNF689  
Affinity Capture-MS Homo sapiens
520 BKRF1  
Affinity Capture-MS
521 ZNF273  
Affinity Capture-MS Homo sapiens
522 TUBG1 7283
Affinity Capture-MS Homo sapiens
523 NOL10  
Affinity Capture-MS Homo sapiens
524 CUL5 8065
Affinity Capture-MS Homo sapiens
525 SMURF1 57154
Affinity Capture-MS Homo sapiens
526 ZNF48  
Affinity Capture-MS Homo sapiens
527 RPS15 6209
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
528 SRP72 6731
Affinity Capture-MS Homo sapiens
529 RPS28 6234
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
530 MOV10 4343
Affinity Capture-RNA Homo sapiens
531 CAD 790
Co-fractionation Homo sapiens
532 TRIP4 9325
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
533 IBTK 25998
Affinity Capture-MS Homo sapiens
534 UPF1 5976
Affinity Capture-Western Homo sapiens
535 PINK1  
Affinity Capture-MS Homo sapiens
536 Rrbp1  
Affinity Capture-MS Mus musculus
537 CDK5RAP3 80279
Affinity Capture-MS Homo sapiens
538 GRSF1 2926
Affinity Capture-MS Homo sapiens
539 ZNF629 23361
Affinity Capture-MS Homo sapiens
540 EEFSEC 60678
Co-fractionation Homo sapiens
541 HNRNPU 3192
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
542 GNB2L1 10399
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
543 STRBP 55342
Affinity Capture-MS Homo sapiens
544 NEDD8 4738
Affinity Capture-MS Homo sapiens
545 CDC5L 988
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
View the network image/svg+xml
 Pathways in which RPS3 is involved
PathwayEvidenceSource
Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S TAS Reactome
Axon guidance IEA Reactome
Cap-dependent Translation Initiation TAS Reactome
Cellular response to starvation IEA Reactome
Cellular responses to stimuli IEA Reactome
Cellular responses to stress IEA Reactome
Developmental Biology IEA Reactome
Disease TAS Reactome
Eukaryotic Translation Elongation IEA Reactome
Eukaryotic Translation Initiation TAS Reactome
Eukaryotic Translation Termination IEA Reactome
Formation of a pool of free 40S subunits TAS Reactome
Formation of the ternary complex, and subsequently, the 43S complex TAS Reactome
GTP hydrolysis and joining of the 60S ribosomal subunit TAS Reactome
Infectious disease TAS Reactome
Influenza Infection TAS Reactome
Influenza Viral RNA Transcription and Replication TAS Reactome
L13a-mediated translational silencing of Ceruloplasmin expression TAS Reactome
Major pathway of rRNA processing in the nucleolus and cytosol TAS Reactome
Metabolism IEA Reactome
Metabolism of amino acids and derivatives IEA Reactome
Metabolism of proteins TAS Reactome
Metabolism of proteins IEA Reactome
Metabolism of RNA TAS Reactome
Nervous system development IEA Reactome
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) TAS Reactome
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) TAS Reactome
Nonsense-Mediated Decay (NMD) TAS Reactome
Peptide chain elongation IEA Reactome
Regulation of expression of SLITs and ROBOs IEA Reactome
Response of EIF2AK4 (GCN2) to amino acid deficiency IEA Reactome
Ribosomal scanning and start codon recognition TAS Reactome
rRNA processing TAS Reactome
rRNA processing in the nucleus and cytosol TAS Reactome
SARS-CoV Infections TAS Reactome
SARS-CoV-1 Infection TAS Reactome
SARS-CoV-1 modulates host translation machinery TAS Reactome
SARS-CoV-1-host interactions TAS Reactome
SARS-CoV-2 Infection TAS Reactome
SARS-CoV-2 modulates host translation machinery TAS Reactome
SARS-CoV-2-host interactions TAS Reactome
Selenoamino acid metabolism IEA Reactome
Selenocysteine synthesis IEA Reactome
Signaling by ROBO receptors IEA Reactome
SRP-dependent cotranslational protein targeting to membrane IEA Reactome
SRP-dependent cotranslational protein targeting to membrane TAS Reactome
Translation TAS Reactome
Translation IEA Reactome
Translation initiation complex formation TAS Reactome
Viral Infection Pathways TAS Reactome
Viral mRNA Translation TAS Reactome





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