Gene description for SNORD89 |
Gene name |
small nucleolar RNA, C/D box 89 |
Gene symbol |
SNORD89 |
Other names/aliases |
HBII-289 |
Species |
Homo sapiens |
Database cross references - SNORD89 |
ExoCarta |
ExoCarta_692205 |
Entrez Gene |
692205 |
HGNC |
32750 |
SNORD89 identified in exosomes derived from the following tissue/cell type |
Endothelial cells
|
26027894
|
Plasma
|
23663360
|
Gene ontology annotations for SNORD89 |
|
Experiment description of studies that identified SNORD89 in exosomes |
1 |
Experiment ID |
226 |
ISEV standards |
✔
EM
|
EV Biophysical techniques |
✔
GAPDH
|
EV Cytosolic markers |
✔
CD9|FLOT1
|
EV Membrane markers |
✔
LMNA|H2AFX|ATP5A1|TOMM20
|
EV Negative markers |
✘
|
EV Particle analysis
|
|
Identified molecule |
snoRNA
|
Identification method |
Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
|
PubMed ID |
26027894
|
Organism |
Homo sapiens |
Experiment description |
Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting |
Authors |
Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar |
Journal name |
Journal of Extracellular Vesicles
|
Publication year |
2015 |
Sample |
Endothelial cells |
Sample name |
HMEC-1 |
Isolation/purification methods |
Differential ultracentrifugation Sucrose density gradient |
Flotation density |
1.10 g/mL
|
Molecules identified in the study |
miRNA Protein snoRNA lncRNA yRNA snRNA mRNA ncRNA mtRNA vtRNA scaRNA lincRNA |
Methods used in the study |
Small RNA sequencing (Illumina HiSeq 2000 (Solexa) Western blotting |
|
|
2 |
Experiment ID |
222 |
ISEV standards |
✘
|
EV Biophysical techniques |
✘
|
EV Cytosolic markers |
✘
|
EV Membrane markers |
✘
|
EV Negative markers |
✔
NTA
|
EV Particle analysis
|
|
Identified molecule |
snoRNA
|
Identification method |
RT-PCR
|
PubMed ID |
23663360
|
Organism |
Homo sapiens |
Experiment description |
Characterization of human plasma-derived exosomal RNAs by deep sequencing |
Authors |
Huang X, Yuan T, Tschannen M, Sun Z, Jacob H, Du M, Liang M, Dittmar RL, Liu Y, Liang M, Kohli M, Thibodeau SN, Boardman L, Wang L |
Journal name |
BMC Genomics
|
Publication year |
2013 |
Sample |
Plasma |
Sample name |
Plasma - Normal |
Isolation/purification methods |
Exoquick |
Flotation density |
-
|
Molecules identified in the study |
miRNA tRNA snRNA snoRNA rRNA piRNA lncRNA |
Methods used in the study |
RT-PCR |
|
|
Protein-protein interactions for SNORD89 |
|
Protein Interactor |
ExoCarta ID |
Identification method |
PubMed |
Species |
No interactions are found.
|
|
Pathways in which SNORD89 is involved |
No pathways found
|
|
|