Gene description for Prdm16
Gene name PR domain containing 16
Gene symbol Prdm16
Other names/aliases 5730557K01Rik
csp1
mel1
Species Mus musculus
 Database cross references - Prdm16
ExoCarta ExoCarta_70673
Vesiclepedia VP_70673
Entrez Gene 70673
UniProt A2A935  
 Prdm16 identified in sEVs derived from the following tissue/cell type
Mast cells 17486113    
 Gene ontology annotations for Prdm16
Molecular Function
    transcription cis-regulatory region binding GO:0000976 ISO
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IBA
    DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001227 ISO
    DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 IBA
    DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 IDA
    transcription coregulator activity GO:0003712 IBA
    transcription coactivator activity GO:0003713 IDA
    protein binding GO:0005515 IPI
    sequence-specific DNA binding GO:0043565 IDA
    sequence-specific DNA binding GO:0043565 ISO
    SMAD binding GO:0046332 IPI
    metal ion binding GO:0046872 IEA
    histone H3K9 methyltransferase activity GO:0046974 IDA
    DNA-binding transcription factor binding GO:0140297 ISO
    histone H3K9me2 methyltransferase activity GO:0140947 IEA
    histone H3K9 monomethyltransferase activity GO:0140948 IEA
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IMP
    negative regulation of transcription by RNA polymerase II GO:0000122 ISO
    negative regulation of transcription by RNA polymerase II GO:0000122 ISS
    chromatin remodeling GO:0006338 IEA
    regulation of transcription by RNA polymerase II GO:0006357 IBA
    stem cell population maintenance GO:0019827 IGI
    stem cell population maintenance GO:0019827 IMP
    neurogenesis GO:0022008 IDA
    negative regulation of transforming growth factor beta receptor signaling pathway GO:0030512 IMP
    negative regulation of transforming growth factor beta receptor signaling pathway GO:0030512 ISO
    negative regulation of transforming growth factor beta receptor signaling pathway GO:0030512 ISS
    negative regulation of granulocyte differentiation GO:0030853 ISO
    negative regulation of granulocyte differentiation GO:0030853 ISS
    methylation GO:0032259 IEA
    somatic stem cell population maintenance GO:0035019 IDA
    regulation of cellular respiration GO:0043457 IDA
    tongue development GO:0043586 IMP
    negative regulation of DNA-templated transcription GO:0045892 IDA
    negative regulation of DNA-templated transcription GO:0045892 ISO
    negative regulation of DNA-templated transcription GO:0045892 ISS
    positive regulation of DNA-templated transcription GO:0045893 IDA
    positive regulation of DNA-templated transcription GO:0045893 IDA
    positive regulation of DNA-templated transcription GO:0045893 ISO
    positive regulation of DNA-templated transcription GO:0045893 ISS
    positive regulation of transcription by RNA polymerase II GO:0045944 IEA
    white fat cell differentiation GO:0050872 IDA
    brown fat cell differentiation GO:0050873 IDA
    brown fat cell differentiation GO:0050873 IMP
    brown fat cell differentiation GO:0050873 IMP
    roof of mouth development GO:0060021 IMP
    heterochromatin organization GO:0070828 IMP
    positive regulation of brown fat cell differentiation GO:0090336 IMP
    positive regulation of cold-induced thermogenesis GO:0120162 IMP
Subcellular Localization
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    nucleus GO:0005634 ISO
    nucleoplasm GO:0005654 ISO
    nucleoplasm GO:0005654 TAS
    transcription regulator complex GO:0005667 IC
    cytoplasm GO:0005737 IEA
    cytosol GO:0005829 ISO
    aggresome GO:0016235 ISO
    transcription repressor complex GO:0017053 IDA
 Experiment description of studies that identified Prdm16 in sEVs
1
Experiment ID 15
MISEV standards
EM
Biophysical techniques
CD63
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 17486113    
Organism Mus musculus
Homo sapiens
Experiment description Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Authors "Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO"
Journal name NCB
Publication year 2007
Sample Mast cells
Sample name MC9
Bone marrow-derived mast cells
HMC-1
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.11-1.21 g/mL
Molecules identified in the study Protein
mRNA
miRNA
Methods used in the study Mass spectrometry [MALDI TOF]
Western blotting
Microarray
miRCURY LNA Array
 Protein-protein interactions for Prdm16
  Protein Interactor ExoCarta ID Identification method PubMed Species
No interactions are found.
 Pathways in which Prdm16 is involved
PathwayEvidenceSource
Chromatin modifying enzymes IEA Reactome
Chromatin organization IEA Reactome
PKMTs methylate histone lysines IEA Reactome





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