Gene ontology annotations for TMX1 |
|
Experiment description of studies that identified TMX1 in exosomes |
1 |
Experiment ID |
489 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
|
Enriched markers |
✔
Canx
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
36408942
|
Organism |
Rattus norvegicus |
Experiment description |
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells |
Authors |
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ." |
Journal name |
Proteomics
|
Publication year |
2023 |
Sample |
Bone marrow mesenchymal stem cells |
Sample name |
BMSC - Passage 6 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
2 |
Experiment ID |
490 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
|
Enriched markers |
✔
Canx
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
36408942
|
Organism |
Rattus norvegicus |
Experiment description |
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells |
Authors |
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ." |
Journal name |
Proteomics
|
Publication year |
2023 |
Sample |
Bone marrow mesenchymal stem cells |
Sample name |
BMSC - Passage 7 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
3 |
Experiment ID |
491 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
|
Enriched markers |
✔
Canx
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
36408942
|
Organism |
Rattus norvegicus |
Experiment description |
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells |
Authors |
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ." |
Journal name |
Proteomics
|
Publication year |
2023 |
Sample |
Bone marrow mesenchymal stem cells |
Sample name |
BMSC - Passage 8 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
4 |
Experiment ID |
492 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
|
Enriched markers |
✔
Canx
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
36408942
|
Organism |
Rattus norvegicus |
Experiment description |
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells |
Authors |
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ." |
Journal name |
Proteomics
|
Publication year |
2023 |
Sample |
Bone marrow mesenchymal stem cells |
Sample name |
BMSC - Passage 9 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
5 |
Experiment ID |
426 |
MISEV standards |
✘
|
Biophysical techniques |
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
|
Enriched markers |
✔
CANX
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
34108659
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker |
Authors |
"Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R." |
Journal name |
Nat Cell Biol
|
Publication year |
2021 |
Sample |
Breast cancer cells |
Sample name |
MDA-MB-231 - Exo-rich fractions 7-10 pooled |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Size exclusion chromatography |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
6 |
Experiment ID |
427 |
MISEV standards |
✘
|
Biophysical techniques |
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
|
Enriched markers |
✔
CANX
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
34108659
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker |
Authors |
"Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R." |
Journal name |
Nat Cell Biol
|
Publication year |
2021 |
Sample |
Breast cancer cells |
Sample name |
MDA-MB-231 - Exo-rich fractions 1-6 pooled |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
7 |
Experiment ID |
1225 |
MISEV standards |
✔
EM
|
Biophysical techniques |
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
31054213
|
Organism |
Homo sapiens |
Experiment description |
Phosphoproteome Profiling of Isogenic Cancer Cell-Derived Exosome Reveals HSP90 as a Potential Marker for Human Cholangiocarcinoma |
Authors |
"Weeraphan C, Phongdara A, Chaiyawat P, Diskul-Na-Ayudthaya P, Chokchaichamnankit D, Verathamjamras C, Netsirisawan P, Yingchutrakul Y, Roytrakul S, Champattanachai V, Svasti J, Srisomsap C." |
Journal name |
Proteomics
|
Publication year |
2019 |
Sample |
Cholangiocarcinoma cells |
Sample name |
KKU-M213 - in-solution digestion |
Isolation/purification methods |
Differential centrifugation Filtration Centrifugal ultrafiltration Ultracentrifugation Sucrose density gradient centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
8 |
Experiment ID |
1226 |
MISEV standards |
✔
EM
|
Biophysical techniques |
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
31054213
|
Organism |
Homo sapiens |
Experiment description |
Phosphoproteome Profiling of Isogenic Cancer Cell-Derived Exosome Reveals HSP90 as a Potential Marker for Human Cholangiocarcinoma |
Authors |
"Weeraphan C, Phongdara A, Chaiyawat P, Diskul-Na-Ayudthaya P, Chokchaichamnankit D, Verathamjamras C, Netsirisawan P, Yingchutrakul Y, Roytrakul S, Champattanachai V, Svasti J, Srisomsap C." |
Journal name |
Proteomics
|
Publication year |
2019 |
Sample |
Cholangiocarcinoma cells |
Sample name |
KKU-M213D5 - in-solution digestion |
Isolation/purification methods |
Differential centrifugation Filtration Centrifugal ultrafiltration Ultracentrifugation Sucrose density gradient centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
9 |
Experiment ID |
419 |
MISEV standards |
✘
|
Biophysical techniques |
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
|
Enriched markers |
✔
CANX
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
34108659
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker |
Authors |
"Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R." |
Journal name |
Nat Cell Biol
|
Publication year |
2021 |
Sample |
Embryonic kidney cells |
Sample name |
HEK293T - Exo-rich fractions 7-10 pooled |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Size exclusion chromatography |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
10 |
Experiment ID |
419 |
MISEV standards |
✘
|
Biophysical techniques |
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
|
Enriched markers |
✔
CANX
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
34108659
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker |
Authors |
"Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R." |
Journal name |
Nat Cell Biol
|
Publication year |
2021 |
Sample |
Embryonic kidney cells |
Sample name |
HEK293T - Exo-rich fractions 7-10 pooled |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Size exclusion chromatography |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
11 |
Experiment ID |
420 |
MISEV standards |
✘
|
Biophysical techniques |
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
|
Enriched markers |
✔
CANX
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
34108659
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker |
Authors |
"Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R." |
Journal name |
Nat Cell Biol
|
Publication year |
2021 |
Sample |
Embryonic kidney cells |
Sample name |
HEK293T - Exo-rich fractions 1-6 pooled |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
12 |
Experiment ID |
420 |
MISEV standards |
✘
|
Biophysical techniques |
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
|
Enriched markers |
✔
CANX
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
34108659
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker |
Authors |
"Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R." |
Journal name |
Nat Cell Biol
|
Publication year |
2021 |
Sample |
Embryonic kidney cells |
Sample name |
HEK293T - Exo-rich fractions 1-6 pooled |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
13 |
Experiment ID |
434 |
MISEV standards |
✘
|
Biophysical techniques |
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
|
Enriched markers |
✔
CANX
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
34108659
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker |
Authors |
"Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R." |
Journal name |
Nat Cell Biol
|
Publication year |
2021 |
Sample |
Pancreatic cancer cells |
Sample name |
PANC-1 - Exo-rich fractions 7-10 pooled |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Size exclusion chromatography |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
14 |
Experiment ID |
435 |
MISEV standards |
✘
|
Biophysical techniques |
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
|
Enriched markers |
✔
CANX
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
34108659
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker |
Authors |
"Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R." |
Journal name |
Nat Cell Biol
|
Publication year |
2021 |
Sample |
Pancreatic cancer cells |
Sample name |
PANC-1 - Exo-rich fractions 1-6 pooled |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
15 |
Experiment ID |
231 |
MISEV standards |
✘
|
Biophysical techniques |
✔
Alix|CD63|CD9
|
Enriched markers |
✘
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25332113
|
Organism |
Homo sapiens |
Experiment description |
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets |
Authors |
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G." |
Journal name |
Transfusion
|
Publication year |
2015 |
Sample |
Platelets |
Sample name |
PL-Exs - Rep 1 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient |
Flotation density |
1.12-1.15 g/mL
|
Molecules identified in the study |
Protein Lipids |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
16 |
Experiment ID |
232 |
MISEV standards |
✘
|
Biophysical techniques |
✘
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25332113
|
Organism |
Homo sapiens |
Experiment description |
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets |
Authors |
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G." |
Journal name |
Transfusion
|
Publication year |
2015 |
Sample |
Platelets |
Sample name |
PL-Exs - Rep 2 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient |
Flotation density |
1.12-1.15 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
17 |
Experiment ID |
233 |
MISEV standards |
✘
|
Biophysical techniques |
✘
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25332113
|
Organism |
Homo sapiens |
Experiment description |
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets |
Authors |
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G." |
Journal name |
Transfusion
|
Publication year |
2015 |
Sample |
Platelets |
Sample name |
PL-Exs - Rep 3 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient |
Flotation density |
1.12-1.15 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
18 |
Experiment ID |
834 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
|
Enriched markers |
✔
CANX
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
35333565
|
Organism |
Homo sapiens |
Experiment description |
LAMP2A regulates the loading of proteins into exosomes |
Authors |
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P" |
Journal name |
Sci Adv
|
Publication year |
2022 |
Sample |
Retinal pigment epithelial cells |
Sample name |
ARPE-19 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
19 |
Experiment ID |
835 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
|
Enriched markers |
✔
CANX
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
35333565
|
Organism |
Homo sapiens |
Experiment description |
LAMP2A regulates the loading of proteins into exosomes |
Authors |
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P" |
Journal name |
Sci Adv
|
Publication year |
2022 |
Sample |
Retinal pigment epithelial cells |
Sample name |
ARPE-19 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
20 |
Experiment ID |
191 |
MISEV standards |
✘
|
Biophysical techniques |
✔
Alix|CD81|CD9
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
20124223
|
Organism |
Homo sapiens |
Experiment description |
Hypoxic tumor cell modulates its microenvironment to enhance angiogenic and metastatic potential by secretion of proteins and exosomes. |
Authors |
"Park JE, Tan HS, Datta A, Lai RC, Zhang H, Meng W, Lim SK, Sze SK." |
Journal name |
Mol Cell Proteomics
|
Publication year |
2010 |
Sample |
Squamous carcinoma cells |
Sample name |
Squamous carcinoma cell (A431) |
Isolation/purification methods |
Differential centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
21 |
Experiment ID |
217 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
TSG101|CD81|CD9|CD63
|
Enriched markers |
✘
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
23844026
|
Organism |
Homo sapiens |
Experiment description |
Characterization of human thymic exosomes. |
Authors |
"Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O." |
Journal name |
PLoS One
|
Publication year |
2013 |
Sample |
Thymus |
Sample name |
Normal-Thymus |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
Protein-protein interactions for TMX1 |
|
Protein Interactor |
ExoCarta ID |
Identification method |
PubMed |
Species |
1 |
UBE2H |
7328 |
Affinity Capture-MS |
 |
Homo sapiens |
|
2 |
HSD17B11 |
51170 |
Proximity Label-MS |
 |
Homo sapiens |
|
3 |
B4GALT5 |
9334 |
Affinity Capture-MS |
 |
Homo sapiens |
|
4 |
IZUMO1 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
5 |
OCLN |
100506658 |
Proximity Label-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
6 |
C1orf27 |
54953 |
Affinity Capture-MS |
 |
Homo sapiens |
|
7 |
KRTCAP2 |
200185 |
Affinity Capture-MS |
 |
Homo sapiens |
|
8 |
MARCKS |
4082 |
Proximity Label-MS |
 |
Homo sapiens |
|
9 |
LAMP3 |
|
Proximity Label-MS |
 |
Homo sapiens |
|
10 |
SQSTM1 |
8878 |
Affinity Capture-MS |
 |
Homo sapiens |
|
11 |
RPA2 |
6118 |
Proximity Label-MS |
 |
Homo sapiens |
|
12 |
ADRB2 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
13 |
SRPR |
6734 |
Affinity Capture-MS |
 |
Homo sapiens |
|
14 |
TYROBP |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
15 |
GJD3 |
|
Proximity Label-MS |
 |
Homo sapiens |
|
16 |
LAMP2 |
3920 |
Proximity Label-MS |
 |
Homo sapiens |
|
17 |
DNAJC25 |
548645 |
Proximity Label-MS |
 |
Homo sapiens |
|
18 |
GRAMD1A |
|
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
19 |
PTPN1 |
5770 |
Proximity Label-MS |
 |
Homo sapiens |
|
20 |
STX4 |
6810 |
Proximity Label-MS |
 |
Homo sapiens |
|
21 |
TLR1 |
7096 |
Affinity Capture-MS |
 |
Homo sapiens |
|
22 |
HCCS |
3052 |
Affinity Capture-MS |
 |
Homo sapiens |
|
23 |
TMEM179B |
374395 |
Affinity Capture-MS |
 |
Homo sapiens |
|
24 |
B3GAT1 |
|
Proximity Label-MS |
 |
Homo sapiens |
|
25 |
BTN2A1 |
11120 |
Affinity Capture-MS |
 |
Homo sapiens |
|
26 |
IGSF8 |
93185 |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
27 |
RAB3B |
5865 |
Proximity Label-MS |
 |
Homo sapiens |
|
28 |
TMED2 |
10959 |
Affinity Capture-MS |
 |
Homo sapiens |
|
29 |
CLEC2B |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
30 |
FGFR4 |
2264 |
Affinity Capture-MS |
 |
Homo sapiens |
|
31 |
SSR1 |
6745 |
Proximity Label-MS |
 |
Homo sapiens |
Co-fractionation |
 |
Homo sapiens |
|
32 |
MARCH5 |
|
Proximity Label-MS |
 |
Homo sapiens |
|
33 |
DDOST |
1650 |
Affinity Capture-MS |
 |
Homo sapiens |
|
34 |
MMP14 |
4323 |
Affinity Capture-MS |
 |
Homo sapiens |
|
35 |
GIMAP5 |
|
Two-hybrid |
 |
Homo sapiens |
|
36 |
USP33 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
37 |
COMT |
1312 |
Affinity Capture-MS |
 |
Homo sapiens |
|
38 |
SEMA4G |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
39 |
UFSP2 |
55325 |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
40 |
LRFN1 |
|
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
41 |
CYSTM1 |
84418 |
Co-fractionation |
 |
Homo sapiens |
|
42 |
CSNK2B |
1460 |
Affinity Capture-MS |
 |
Homo sapiens |
|
43 |
GRAMD1C |
|
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
44 |
EHD1 |
10938 |
Affinity Capture-MS |
 |
Homo sapiens |
|
45 |
METTL7A |
25840 |
Proximity Label-MS |
 |
Homo sapiens |
|
46 |
FAS |
355 |
Two-hybrid |
 |
Homo sapiens |
|
47 |
LMAN1 |
3998 |
Co-fractionation |
 |
Homo sapiens |
|
48 |
KIAA1715 |
80856 |
Proximity Label-MS |
 |
Homo sapiens |
|
49 |
PXMP2 |
|
Proximity Label-MS |
 |
Homo sapiens |
|
50 |
RAB5A |
5868 |
Proximity Label-MS |
 |
Homo sapiens |
|
51 |
PANX1 |
24145 |
Proximity Label-MS |
 |
Homo sapiens |
|
52 |
SULT2A1 |
|
Two-hybrid |
 |
Homo sapiens |
|
53 |
EMD |
2010 |
Proximity Label-MS |
 |
Homo sapiens |
|
54 |
COPE |
11316 |
Affinity Capture-MS |
 |
Homo sapiens |
|
55 |
TSPAN3 |
10099 |
Affinity Capture-MS |
 |
Homo sapiens |
|
56 |
ATF2 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
57 |
ASNA1 |
439 |
Two-hybrid |
 |
Homo sapiens |
|
58 |
SDK1 |
221935 |
Affinity Capture-MS |
 |
Homo sapiens |
|
59 |
CYB5A |
1528 |
Co-fractionation |
 |
Homo sapiens |
|
60 |
PMAIP1 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
61 |
BCL2L2 |
599 |
Two-hybrid |
 |
Homo sapiens |
|
62 |
SNN |
|
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
63 |
RDH11 |
51109 |
Affinity Capture-MS |
 |
Homo sapiens |
|
64 |
LYPD6 |
|
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
65 |
RPN1 |
6184 |
Proximity Label-MS |
 |
Homo sapiens |
|
66 |
DNAJC30 |
|
Proximity Label-MS |
 |
Homo sapiens |
|
67 |
ARHGAP36 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
68 |
LHFPL5 |
|
Two-hybrid |
 |
Homo sapiens |
|
69 |
ELOVL5 |
60481 |
Proximity Label-MS |
 |
Homo sapiens |
|
70 |
VDAC2 |
7417 |
Co-fractionation |
 |
Homo sapiens |
|
71 |
SEC61B |
10952 |
Proximity Label-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
72 |
DNAJB11 |
51726 |
Proximity Label-MS |
 |
Homo sapiens |
|
73 |
PNLDC1 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
74 |
REEP5 |
7905 |
Proximity Label-MS |
 |
Homo sapiens |
|
75 |
DUSP22 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
76 |
SEC63 |
11231 |
Proximity Label-MS |
 |
Homo sapiens |
|
77 |
CD320 |
51293 |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
78 |
CYB5B |
80777 |
Co-fractionation |
 |
Homo sapiens |
|
79 |
RPN2 |
6185 |
Proximity Label-MS |
 |
Homo sapiens |
|
80 |
CANX |
821 |
Affinity Capture-MS |
 |
Homo sapiens |
|
81 |
RAB7A |
7879 |
Proximity Label-MS |
 |
Homo sapiens |
|
82 |
LRRC59 |
55379 |
Proximity Label-MS |
 |
Homo sapiens |
|
83 |
LMNB1 |
4001 |
Proximity Label-MS |
 |
Homo sapiens |
|
84 |
RNF128 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
85 |
LAMP1 |
3916 |
Proximity Label-MS |
 |
Homo sapiens |
|
86 |
CD274 |
29126 |
Affinity Capture-MS |
 |
Homo sapiens |
|
87 |
BCAP31 |
10134 |
Proximity Label-MS |
 |
Homo sapiens |
|
88 |
HSD3B7 |
80270 |
Proximity Label-MS |
 |
Homo sapiens |
|
89 |
STIM1 |
6786 |
Proximity Label-MS |
 |
Homo sapiens |
|
90 |
FKBP8 |
23770 |
Two-hybrid |
 |
Homo sapiens |
Proximity Label-MS |
 |
Homo sapiens |
|
91 |
DCAKD |
79877 |
Affinity Capture-MS |
 |
Homo sapiens |
|
92 |
IL27RA |
9466 |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
93 |
PLXNB2 |
23654 |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
94 |
EPHA7 |
2045 |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
95 |
CD276 |
80381 |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
96 |
CNR2 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
97 |
RPA3 |
6119 |
Proximity Label-MS |
 |
Homo sapiens |
|
98 |
ATP2A1 |
487 |
Proximity Label-MS |
 |
Homo sapiens |
|
99 |
RAB9A |
9367 |
Proximity Label-MS |
 |
Homo sapiens |
|
100 |
PMP22 |
|
Two-hybrid |
 |
Homo sapiens |
|
101 |
DNAJC3 |
5611 |
Proximity Label-MS |
 |
Homo sapiens |
|
102 |
DHFRL1 |
|
Proximity Label-MS |
 |
Homo sapiens |
|
103 |
GIMAP1 |
|
Two-hybrid |
 |
Homo sapiens |
|
104 |
COPA |
1314 |
Affinity Capture-MS |
 |
Homo sapiens |
|
105 |
VDAC1 |
7416 |
Co-fractionation |
 |
Homo sapiens |
|
106 |
KIAA0319L |
79932 |
Affinity Capture-MS |
 |
Homo sapiens |
|
107 |
GMCL1 |
|
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
108 |
RPL7 |
6129 |
Co-fractionation |
 |
Homo sapiens |
|
109 |
LMNA |
4000 |
Proximity Label-MS |
 |
Homo sapiens |
|
110 |
GRAMD1B |
|
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
111 |
ZPLD1 |
|
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
112 |
HGFAC |
3083 |
Affinity Capture-MS |
 |
Homo sapiens |
|
113 |
H2AFX |
3014 |
Affinity Capture-MS |
 |
Homo sapiens |
|
114 |
ADAM9 |
8754 |
Affinity Capture-MS |
 |
Homo sapiens |
|
115 |
TLR10 |
|
Affinity Capture-MS |
 |
Homo sapiens |
|
116 |
NRP1 |
8829 |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
117 |
PLEKHA4 |
57664 |
Affinity Capture-MS |
 |
Homo sapiens |
|
118 |
TMED10 |
10972 |
Affinity Capture-MS |
 |
Homo sapiens |
|
119 |
COLEC12 |
81035 |
Affinity Capture-MS |
 |
Homo sapiens |
Affinity Capture-MS |
 |
Homo sapiens |
|
120 |
PARP1 |
142 |
Affinity Capture-MS |
 |
Homo sapiens |
|
121 |
CKAP4 |
10970 |
Proximity Label-MS |
 |
Homo sapiens |
|
122 |
PDIA4 |
9601 |
Proximity Label-MS |
 |
Homo sapiens |
|
123 |
ANKRD46 |
157567 |
Affinity Capture-MS |
 |
Homo sapiens |
|
124 |
CALU |
813 |
Proximity Label-MS |
 |
Homo sapiens |
|
125 |
EPHX1 |
2052 |
Co-fractionation |
 |
Homo sapiens |
|
126 |
CSPG5 |
10675 |
Affinity Capture-MS |
 |
| | | |