Gene description for Ddx1
Gene name DEAD (Asp-Glu-Ala-Asp) box helicase 1
Gene symbol Ddx1
Other names/aliases -
Species Rattus norvegicus
 Database cross references - Ddx1
ExoCarta ExoCarta_84474
Entrez Gene 84474
UniProt Q641Y8  
 Ddx1 identified in exosomes derived from the following tissue/cell type
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
 Gene ontology annotations for Ddx1
Molecular Function
    exonuclease activity GO:0004527 IEA
    DNA/RNA helicase activity GO:0033677 ISS
    poly(A) RNA binding GO:0044822 ISO
    DNA binding GO:0003677 IEA
    ATP binding GO:0005524 IEA
    poly(A) binding GO:0008143 ISS
    ATP-dependent helicase activity GO:0008026 ISS
    transcription cofactor activity GO:0003712 ISS
    double-stranded RNA binding GO:0003725 ISO
    nuclease activity GO:0004518 ISS
    ATP-dependent RNA helicase activity GO:0004004 IBA
    chromatin binding GO:0003682 ISS
Biological Process
    regulation of transcription, DNA-templated GO:0006355 IEA
    double-strand break repair GO:0006302 ISS
    response to virus GO:0009615 ISO
    tRNA splicing, via endonucleolytic cleavage and ligation GO:0006388 ISS
    nucleic acid phosphodiester bond hydrolysis GO:0090305 ISS
    multicellular organismal development GO:0007275 ISO
    transcription, DNA-templated GO:0006351 IEA
    response to exogenous dsRNA GO:0043330 ISO
    DNA duplex unwinding GO:0032508 ISS
    mRNA processing GO:0006397 IEA
    RNA secondary structure unwinding GO:0010501 IBA
Subcellular Localization
    nucleus GO:0005634 ISS
    ribonucleoprotein complex GO:0030529 ISO
    nucleoplasm GO:0005654 ISO
    tRNA-splicing ligase complex GO:0072669 ISS
    cytoplasm GO:0005737 ISS
    cleavage body GO:0071920 ISS
    cytoplasmic stress granule GO:0010494 ISS
    membrane GO:0016020 ISO
 Experiment description of studies that identified Ddx1 in exosomes
1
Experiment ID 94
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
2
Experiment ID 95
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
3
Experiment ID 96
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
4
Experiment ID 98
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
 Protein-protein interactions for Ddx1
  Protein Interactor ExoCarta ID Identification method PubMed Species
No interactions are found.
 Pathways in which Ddx1 is involved
No pathways found





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