Gene description for Col16a1
Gene name collagen, type XVI, alpha 1
Gene symbol Col16a1
Other names/aliases 2700007F12Rik
A530052M23Rik
AI838662
CA1F
Species Mus musculus
 Database cross references - Col16a1
ExoCarta ExoCarta_107581
Vesiclepedia VP_107581
Entrez Gene 107581
UniProt Q8BLX7  
 Col16a1 identified in sEVs derived from the following tissue/cell type
Colon cancer cells 37309723    
T-cell lymphoma cells 37309723    
 Gene ontology annotations for Col16a1
Molecular Function
    integrin binding GO:0005178 ISO
    integrin binding GO:0005178 ISS
    extracellular matrix structural constituent conferring tensile strength GO:0030020 IBA
    extracellular matrix structural constituent conferring tensile strength GO:0030020 RCA
Biological Process
    cell adhesion GO:0007155 ISO
    cell adhesion GO:0007155 ISS
    extracellular matrix organization GO:0030198 IBA
    integrin activation GO:0033622 IEA
    integrin activation GO:0033622 ISO
    cell adhesion mediated by integrin GO:0033627 IEA
    cell adhesion mediated by integrin GO:0033627 ISO
    positive regulation of focal adhesion assembly GO:0051894 IEA
    positive regulation of focal adhesion assembly GO:0051894 ISO
    cellular response to amino acid stimulus GO:0071230 IDA
Subcellular Localization
    extracellular region GO:0005576 IEA
    collagen trimer GO:0005581 IEA
    collagen type IX trimer GO:0005594 IBA
    basement membrane GO:0005604 IBA
    extracellular space GO:0005615 IBA
    collagen-containing extracellular matrix GO:0062023 HDA
 Experiment description of studies that identified Col16a1 in sEVs
1
Experiment ID 907
MISEV standards
✔
EM
Biophysical techniques
✔
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
✔
HSPA5
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 37309723    
Organism Mus musculus
Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name Proteomics
Publication year 2023
Sample Colon cancer cells
Sample name C26
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 908
MISEV standards
✔
EM
Biophysical techniques
✔
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
✔
HSPA5
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 37309723    
Organism Mus musculus
Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name Proteomics
Publication year 2023
Sample T-cell lymphoma cells
Sample name EL4
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
 Protein-protein interactions for Col16a1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Col2a1 12824
Co-fractionation Mus musculus
2 Col6a2 12834
Co-fractionation Mus musculus
3 Col11a1  
Co-fractionation Mus musculus
View the network image/svg+xml



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