Gene description for Sod1
Gene name superoxide dismutase 1, soluble
Gene symbol Sod1
Other names/aliases CuZnSOD
Species Rattus norvegicus
 Database cross references - Sod1
ExoCarta ExoCarta_24786
Vesiclepedia VP_24786
Entrez Gene 24786
UniProt P07632  
 Sod1 identified in exosomes derived from the following tissue/cell type
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Urine 20535238    
 Gene ontology annotations for Sod1
Molecular Function
    superoxide dismutase activity GO:0004784 IBA
    superoxide dismutase activity GO:0004784 IDA
    superoxide dismutase activity GO:0004784 IEA
    superoxide dismutase activity GO:0004784 IMP
    superoxide dismutase activity GO:0004784 ISO
    superoxide dismutase activity GO:0004784 ISS
    copper ion binding GO:0005507 IBA
    copper ion binding GO:0005507 IEA
    copper ion binding GO:0005507 IMP
    copper ion binding GO:0005507 ISO
    copper ion binding GO:0005507 ISS
    copper ion binding GO:0005507 TAS
    zinc ion binding GO:0008270 IEA
    zinc ion binding GO:0008270 ISO
    zinc ion binding GO:0008270 ISS
    enzyme binding GO:0019899 IPI
    protein phosphatase 2B binding GO:0030346 IDA
    protein phosphatase 2B binding GO:0030346 IEA
    protein phosphatase 2B binding GO:0030346 ISO
    protein phosphatase 2B binding GO:0030346 ISS
    small GTPase binding GO:0031267 IEA
    small GTPase binding GO:0031267 ISO
    identical protein binding GO:0042802 ISO
    protein homodimerization activity GO:0042803 IEA
    protein homodimerization activity GO:0042803 ISO
    protein-folding chaperone binding GO:0051087 IEA
    protein-folding chaperone binding GO:0051087 ISO
    protein-folding chaperone binding GO:0051087 ISS
Biological Process
    response to reactive oxygen species GO:0000302 ISO
    response to superoxide GO:0000303 ISO
    response to superoxide GO:0000303 ISO
    response to superoxide GO:0000303 ISS
    ovarian follicle development GO:0001541 ISO
    ovarian follicle development GO:0001541 ISS
    positive regulation of cytokine production GO:0001819 IEA
    positive regulation of cytokine production GO:0001819 ISO
    positive regulation of cytokine production GO:0001819 ISS
    retina homeostasis GO:0001895 ISO
    retina homeostasis GO:0001895 ISS
    response to amphetamine GO:0001975 IEP
    myeloid cell homeostasis GO:0002262 ISO
    myeloid cell homeostasis GO:0002262 ISS
    glutathione metabolic process GO:0006749 ISO
    glutathione metabolic process GO:0006749 ISS
    superoxide metabolic process GO:0006801 IDA
    superoxide metabolic process GO:0006801 ISO
    superoxide metabolic process GO:0006801 ISO
    superoxide metabolic process GO:0006801 ISS
    superoxide metabolic process GO:0006801 TAS
    intracellular iron ion homeostasis GO:0006879 ISO
    intracellular iron ion homeostasis GO:0006879 ISS
    apoptotic process GO:0006915 ISO
    response to oxidative stress GO:0006979 IMP
    response to oxidative stress GO:0006979 ISO
    response to oxidative stress GO:0006979 TAS
    spermatogenesis GO:0007283 ISO
    spermatogenesis GO:0007283 ISS
    embryo implantation GO:0007566 ISO
    embryo implantation GO:0007566 ISS
    sensory perception of sound GO:0007605 ISO
    sensory perception of sound GO:0007605 ISS
    locomotory behavior GO:0007626 ISO
    locomotory behavior GO:0007626 ISS
    anterograde axonal transport GO:0008089 ISO
    retrograde axonal transport GO:0008090 ISO
    regulation of blood pressure GO:0008217 ISO
    regulation of blood pressure GO:0008217 ISS
    determination of adult lifespan GO:0008340 ISO
    response to heat GO:0009408 ISO
    response to heat GO:0009408 ISS
    response to xenobiotic stimulus GO:0009410 ISO
    gene expression GO:0010467 ISO
    transmission of nerve impulse GO:0019226 ISO
    transmission of nerve impulse GO:0019226 ISS
    neuronal action potential GO:0019228 ISO
    removal of superoxide radicals GO:0019430 IBA
    removal of superoxide radicals GO:0019430 IDA
    removal of superoxide radicals GO:0019430 IEA
    removal of superoxide radicals GO:0019430 IMP
    removal of superoxide radicals GO:0019430 ISO
    removal of superoxide radicals GO:0019430 ISO
    removal of superoxide radicals GO:0019430 ISS
    removal of superoxide radicals GO:0019430 TAS
    response to nutrient levels GO:0031667 IDA
    response to nutrient levels GO:0031667 IEP
    peripheral nervous system myelin maintenance GO:0032287 ISO
    peripheral nervous system myelin maintenance GO:0032287 ISS
    positive regulation of superoxide anion generation GO:0032930 IEA
    positive regulation of superoxide anion generation GO:0032930 ISO
    response to carbon monoxide GO:0034465 IEP
    cellular response to oxidative stress GO:0034599 IEP
    ectopic germ cell programmed cell death GO:0035234 ISO
    cellular response to potassium ion GO:0035865 IEP
    regulation of multicellular organism growth GO:0040014 ISO
    regulation of multicellular organism growth GO:0040014 ISS
    response to hydrogen peroxide GO:0042542 ISO
    response to hydrogen peroxide GO:0042542 ISS
    superoxide anion generation GO:0042554 ISO
    negative regulation of apoptotic process GO:0043066 IMP
    negative regulation of apoptotic process GO:0043066 ISO
    positive regulation of catalytic activity GO:0043085 IDA
    positive regulation of MAPK cascade GO:0043410 ISO
    positive regulation of MAPK cascade GO:0043410 ISS
    negative regulation of neuron apoptotic process GO:0043524 ISO
    negative regulation of neuron apoptotic process GO:0043524 ISS
    response to ethanol GO:0045471 ISO
    response to ethanol GO:0045471 ISS
    response to copper ion GO:0046688 IEP
    response to copper ion GO:0046688 IMP
    muscle cell cellular homeostasis GO:0046716 ISO
    muscle cell cellular homeostasis GO:0046716 ISS
    response to axon injury GO:0048678 ISO
    response to axon injury GO:0048678 ISS
    hydrogen peroxide biosynthetic process GO:0050665 IDA
    hydrogen peroxide biosynthetic process GO:0050665 IEA
    hydrogen peroxide biosynthetic process GO:0050665 IMP
    hydrogen peroxide biosynthetic process GO:0050665 ISO
    hydrogen peroxide biosynthetic process GO:0050665 ISO
    hydrogen peroxide biosynthetic process GO:0050665 ISS
    negative regulation of inflammatory response GO:0050728 ISO
    positive regulation of phagocytosis GO:0050766 ISO
    negative regulation of developmental process GO:0051093 ISO
    regulation of mitochondrial membrane potential GO:0051881 IEA
    regulation of mitochondrial membrane potential GO:0051881 ISO
    regulation of mitochondrial membrane potential GO:0051881 ISS
    heart contraction GO:0060047 IEA
    heart contraction GO:0060047 ISO
    heart contraction GO:0060047 ISO
    heart contraction GO:0060047 ISS
    neurofilament cytoskeleton organization GO:0060052 ISO
    neurofilament cytoskeleton organization GO:0060052 ISS
    relaxation of vascular associated smooth muscle GO:0060087 ISO
    relaxation of vascular associated smooth muscle GO:0060087 ISS
    auditory receptor cell stereocilium organization GO:0060088 ISO
    auditory receptor cell stereocilium organization GO:0060088 ISS
    cellular response to cadmium ion GO:0071276 IEP
    cellular response to ATP GO:0071318 IEP
    reactive oxygen species metabolic process GO:0072593 ISO
    reactive oxygen species metabolic process GO:0072593 ISS
    response to antipsychotic drug GO:0097332 IEP
    action potential initiation GO:0099610 ISO
    positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway GO:1902177 IEA
    positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway GO:1902177 ISO
    negative regulation of reproductive process GO:2000242 ISO
Subcellular Localization
    extracellular region GO:0005576 IDA
    extracellular space GO:0005615 IEA
    extracellular space GO:0005615 ISO
    nucleus GO:0005634 IBA
    nucleus GO:0005634 ISO
    nucleus GO:0005634 ISS
    nucleoplasm GO:0005654 IEA
    nucleoplasm GO:0005654 ISO
    cytoplasm GO:0005737 ISO
    cytoplasm GO:0005737 ISS
    mitochondrion GO:0005739 IBA
    mitochondrion GO:0005739 IEA
    mitochondrion GO:0005739 ISO
    mitochondrion GO:0005739 ISS
    lysosome GO:0005764 IDA
    peroxisome GO:0005777 IBA
    peroxisome GO:0005777 IDA
    peroxisome GO:0005777 IEA
    peroxisome GO:0005777 ISO
    cytosol GO:0005829 IBA
    cytosol GO:0005829 IEA
    cytosol GO:0005829 ISO
    cytosol GO:0005829 ISS
    plasma membrane GO:0005886 IEA
    plasma membrane GO:0005886 ISO
    plasma membrane GO:0005886 ISS
    secretory granule GO:0030141 IDA
    dense core granule GO:0031045 IDA
    cytoplasmic vesicle GO:0031410 IEA
    cytoplasmic vesicle GO:0031410 ISO
    cytoplasmic vesicle GO:0031410 ISS
    dendrite cytoplasm GO:0032839 IEA
    dendrite cytoplasm GO:0032839 ISO
    dendrite cytoplasm GO:0032839 ISS
    protein-containing complex GO:0032991 IDA
    protein-containing complex GO:0032991 IEA
    protein-containing complex GO:0032991 ISO
    protein-containing complex GO:0032991 ISS
    neuronal cell body GO:0043025 IDA
    neuronal cell body GO:0043025 IEA
    neuronal cell body GO:0043025 ISO
    neuronal cell body GO:0043025 ISS
    axon cytoplasm GO:1904115 IEA
 Experiment description of studies that identified Sod1 in exosomes
1
Experiment ID 90
MISEV standards
EM
Biophysical techniques
HSC70|HSP90|TSG101|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
2
Experiment ID 95
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
3
Experiment ID 99
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [QSTAR]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
4
Experiment ID 100
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [QSTAR]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
5
Experiment ID 101
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [QSTAR]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
6
Experiment ID 192
MISEV standards
CEM
Biophysical techniques
TSG101|HSP70|CD63|CD81|FLOT
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 20535238    
Organism Rattus norvegicus
Experiment description Candidate biomarkers in exosome-like vesicles purified from rat and mouse urine samples.
Authors Conde-Vancells J, Rodriguez-Suarez E, Gonzalez E, Berisa A, Gil D, Embade N, Valle M, Luka Z, Elortza F, Wagner C, Lu SC, Mato JM, Falcon-Perez M.
Journal name Proteomics Clin Appl
Publication year 2010
Sample Urine
Sample name Urine - Rats of liver injury
Isolation/purification methods Differential centrifugation
Filtration
UltracentrifugationSucrose cushion
Sucrose density gradient
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for Sod1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 STXBP5L  
Affinity Capture-MS Homo sapiens
2 P4hb 25506
Affinity Capture-Western Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
3 Park7 117287
Affinity Capture-MS Rattus norvegicus
4 Gja1  
Affinity Capture-MS Rattus norvegicus
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