Gene description for Sod1
Gene name superoxide dismutase 1, soluble
Gene symbol Sod1
Other names/aliases CuZnSOD
Species Rattus norvegicus
 Database cross references - Sod1
ExoCarta ExoCarta_24786
Entrez Gene 24786
UniProt P07632  
 Sod1 identified in exosomes derived from the following tissue/cell type
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Urine 20535238    
 Gene ontology annotations for Sod1
Molecular Function
    Rac GTPase binding GO:0048365 ISO
    identical protein binding GO:0042802 ISO
    zinc ion binding GO:0008270 ISS
    protein phosphatase 2B binding GO:0030346 ISS
    copper ion binding GO:0005507 TAS
    superoxide dismutase activity GO:0004784 ISS
    enzyme binding GO:0019899 IPI
    chaperone binding GO:0051087 ISS
Biological Process
    removal of superoxide radicals GO:0019430 TAS
    sensory perception of sound GO:0007605 ISS
    response to reactive oxygen species GO:0000302 ISO
    superoxide metabolic process GO:0006801 TAS
    cellular response to cadmium ion GO:0071276 IEP
    locomotory behavior GO:0007626 ISS
    oxidation-reduction process GO:0055114 ISO
    glutathione metabolic process GO:0006749 ISS
    positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway GO:1902177 ISO
    response to antipsychotic drug GO:0097332 IEP
    myeloid cell homeostasis GO:0002262 ISS
    aging GO:0007568 ISO
    cellular iron ion homeostasis GO:0006879 ISS
    response to ethanol GO:0045471 ISS
    double-strand break repair GO:0006302 ISS
    response to axon injury GO:0048678 ISS
    positive regulation of superoxide anion generation GO:0032930 ISO
    retrograde axon cargo transport GO:0008090 ISO
    transmission of nerve impulse GO:0019226 ISS
    response to organic substance GO:0010033 ISS
    cell aging GO:0007569 ISS
    auditory receptor cell stereocilium organization GO:0060088 ISS
    cellular response to potassium ion GO:0035865 IEP
    cellular response to ATP GO:0071318 IEP
    anterograde axon cargo transport GO:0008089 ISO
    relaxation of vascular smooth muscle GO:0060087 ISS
    hydrogen peroxide biosynthetic process GO:0050665 ISS
    regulation of mitochondrial membrane potential GO:0051881 ISS
    activation of MAPK activity GO:0000187 ISS
    ovarian follicle development GO:0001541 ISS
    response to superoxide GO:0000303 ISS
    negative regulation of apoptotic process GO:0043066 ISO
    heart contraction GO:0060047 ISS
    regulation of multicellular organism growth GO:0040014 ISS
    response to copper ion GO:0046688 IMP
    response to nutrient levels GO:0031667 IEP
    response to heat GO:0009408 ISS
    peripheral nervous system myelin maintenance GO:0032287 ISS
    spermatogenesis GO:0007283 ISS
    regulation of GTPase activity GO:0043087 ISO
    negative regulation of cholesterol biosynthetic process GO:0045541 ISS
    regulation of protein kinase activity GO:0045859 ISS
    response to amphetamine GO:0001975 IEP
    cellular response to oxidative stress GO:0034599 IEP
    response to drug GO:0042493 ISS
    response to carbon monoxide GO:0034465 IEP
    positive regulation of catalytic activity GO:0043085 ISS
    retina homeostasis GO:0001895 ISS
    superoxide anion generation GO:0042554 ISO
    negative regulation of neuron apoptotic process GO:0043524 ISS
    muscle cell cellular homeostasis GO:0046716 ISS
    reactive oxygen species metabolic process GO:0072593 ISS
    regulation of blood pressure GO:0008217 ISS
    response to oxidative stress GO:0006979 TAS
    embryo implantation GO:0007566 ISS
    neurofilament cytoskeleton organization GO:0060052 ISS
    response to antibiotic GO:0046677 IEP
    positive regulation of cytokine production GO:0001819 ISS
    apoptotic DNA fragmentation GO:0006309 ISS
    response to hydrogen peroxide GO:0042542 ISS
Subcellular Localization
    peroxisome GO:0005777 ISO
    plasma membrane GO:0005886 ISS
    secretory granule GO:0030141 IDA
    cytoplasm GO:0005737 ISS
    dendrite cytoplasm GO:0032839 ISS
    extracellular matrix GO:0031012 ISS
    protein complex GO:0043234 ISS
    extracellular region GO:0005576 IDA
    cytosol GO:0005829 ISS
    neuronal cell body GO:0043025 ISS
    mitochondrial intermembrane space GO:0005758 IDA
    extracellular exosome GO:0070062 ISO
    neuron projection GO:0043005 IDA
    nucleus GO:0005634 ISS
    cell GO:0005623 ISO
    intracellular GO:0005622 ISO
    dense core granule GO:0031045 IDA
    mitochondrion GO:0005739 ISS
    lysosome GO:0005764 IDA
    cytoplasmic vesicle GO:0031410 ISS
    nucleoplasm GO:0005654 ISO
    myelin sheath GO:0043209 ISO
    extracellular space GO:0005615 ISS
 Experiment description of studies that identified Sod1 in exosomes
1
Experiment ID 90
ISEV standards
EM
EV Biophysical techniques
HSC70|HSP90|TSG101
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
2
Experiment ID 95
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
3
Experiment ID 99
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [QSTAR]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
4
Experiment ID 100
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [QSTAR]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
5
Experiment ID 101
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [QSTAR]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
6
Experiment ID 192
ISEV standards
CEM
EV Biophysical techniques
TSG101|HSP70
EV Cytosolic markers
CD63|CD81|FLOT
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 20535238    
Organism Rattus norvegicus
Experiment description Candidate biomarkers in exosome-like vesicles purified from rat and mouse urine samples.
Authors Conde-Vancells J, Rodriguez-Suarez E, Gonzalez E, Berisa A, Gil D, Embade N, Valle M, Luka Z, Elortza F, Wagner C, Lu SC, Mato JM, Falcon-Perez M.
Journal name Proteomics Clin Appl
Publication year 2010
Sample Urine
Sample name Urine - Rats of liver injury
Isolation/purification methods Differential centrifugation
Filtration
UltracentrifugationSucrose cushion
Sucrose density gradient
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for Sod1
  Protein Interactor ExoCarta ID Identification method PubMed Species
No interactions are found.
 Pathways in which Sod1 is involved
PathwayEvidenceSource
Detoxification of Reactive Oxygen Species IEA Reactome
Platelet degranulation IEA Reactome





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