Gene description for Otub1
Gene name OTU deubiquitinase, ubiquitin aldehyde binding 1
Gene symbol Otub1
Other names/aliases -
Species Rattus norvegicus
 Database cross references - Otub1
ExoCarta ExoCarta_293705
Entrez Gene 293705
UniProt B2RYG6  
 Otub1 identified in exosomes derived from the following tissue/cell type
Reticulocytes 21828046    
Reticulocytes 21828046    
 Gene ontology annotations for Otub1
Molecular Function
    NEDD8-specific protease activity GO:0019784 ISS
    ubiquitin binding GO:0043130 ISS
    ubiquitin protein ligase binding GO:0031625 ISO
    ubiquitin-specific protease activity GO:0004843 ISS
    molecular_function GO:0003674 ND
Biological Process
    negative regulation of double-strand break repair GO:2000780 ISS
    cellular response to DNA damage stimulus GO:0006974 ISS
    cellular response to interleukin-1 GO:0071347 IEP
    immune system process GO:0002376 IEA
    DNA repair GO:0006281 IEA
    protein K48-linked deubiquitination GO:0071108 ISS
    negative regulation of histone H2A K63-linked ubiquitination GO:1901315 ISS
Subcellular Localization
    extracellular exosome GO:0070062 ISO
    nucleus GO:0005634 IDA
    cytoplasm GO:0005737 IDA
 Experiment description of studies that identified Otub1 in exosomes
1
Experiment ID 95
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
2
Experiment ID 98
ISEV standards
EM
EV Biophysical techniques
TSG101|HSP90|HSC70
EV Cytosolic markers
MHCI
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
 Protein-protein interactions for Otub1
  Protein Interactor ExoCarta ID Identification method PubMed Species
No interactions are found.
 Pathways in which Otub1 is involved
No pathways found





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