Gene description for Calr
Gene name calreticulin
Gene symbol Calr
Other names/aliases -
Species Rattus norvegicus
 Database cross references - Calr
ExoCarta ExoCarta_64202
Vesiclepedia VP_64202
Entrez Gene 64202
UniProt P18418  
 Calr identified in exosomes derived from the following tissue/cell type
Adipocytes 25998041    
Hepatocytes 19367702    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
 Gene ontology annotations for Calr
Molecular Function
    complement component C1q complex binding GO:0001849 ISO
    mRNA binding GO:0003729 IDA
    mRNA binding GO:0003729 ISO
    nuclear export signal receptor activity GO:0005049 ISO
    integrin binding GO:0005178 ISO
    iron ion binding GO:0005506 IDA
    calcium ion binding GO:0005509 IBA
    calcium ion binding GO:0005509 IDA
    calcium ion binding GO:0005509 IEA
    calcium ion binding GO:0005509 ISO
    protein binding GO:0005515 IPI
    carbohydrate binding GO:0030246 IEA
    carbohydrate binding GO:0030246 ISO
    ubiquitin protein ligase binding GO:0031625 ISO
    peptide binding GO:0042277 IDA
    hormone binding GO:0042562 IPI
    nuclear androgen receptor binding GO:0050681 ISO
    unfolded protein binding GO:0051082 IEA
    molecular sequestering activity GO:0140313 ISO
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 ISO
    peptide antigen assembly with MHC class I protein complex GO:0002502 ISO
    protein folding GO:0006457 IBA
    protein folding GO:0006457 IEA
    protein folding GO:0006457 TAS
    protein export from nucleus GO:0006611 ISO
    spermatogenesis GO:0007283 IEP
    positive regulation of cell population proliferation GO:0008284 ISO
    response to xenobiotic stimulus GO:0009410 IEP
    positive regulation of endothelial cell migration GO:0010595 ISO
    positive regulation of gene expression GO:0010628 ISO
    negative regulation of translation GO:0017148 ISO
    cortical actin cytoskeleton organization GO:0030866 ISO
    response to estradiol GO:0032355 IEP
    negative regulation of intracellular steroid hormone receptor signaling pathway GO:0033144 ISO
    response to testosterone GO:0033574 IEP
    protein localization to nucleus GO:0034504 ISO
    ERAD pathway GO:0036503 IBA
    regulation of meiotic nuclear division GO:0040020 ISO
    negative regulation of neuron differentiation GO:0045665 ISO
    positive regulation of cell cycle GO:0045787 ISO
    positive regulation of cell cycle GO:0045787 ISO
    negative regulation of DNA-templated transcription GO:0045892 ISO
    negative regulation of retinoic acid receptor signaling pathway GO:0048387 ISO
    positive regulation of phagocytosis GO:0050766 ISO
    protein stabilization GO:0050821 ISO
    protein stabilization GO:0050821 ISS
    cardiac muscle cell differentiation GO:0055007 IEP
    cellular response to electrical stimulus GO:0071257 IEP
    cellular response to lithium ion GO:0071285 IEP
    cellular senescence GO:0090398 ISO
    cellular response to virus GO:0098586 IEP
    positive regulation of substrate adhesion-dependent cell spreading GO:1900026 ISO
    negative regulation of trophoblast cell migration GO:1901164 ISO
    positive regulation of non-canonical NF-kappaB signal transduction GO:1901224 ISO
    response to peptide GO:1901652 IEP
    response to glycoside GO:1903416 IEP
    response to biphenyl GO:1904614 IEP
    positive regulation of dendritic cell chemotaxis GO:2000510 ISO
Subcellular Localization
    acrosomal vesicle GO:0001669 IDA
    extracellular region GO:0005576 IEA
    extracellular space GO:0005615 IDA
    extracellular space GO:0005615 ISO
    nucleus GO:0005634 ISO
    nuclear envelope GO:0005635 IDA
    nuclear envelope GO:0005635 ISO
    cytoplasm GO:0005737 ISO
    mitochondrion GO:0005739 IDA
    endoplasmic reticulum GO:0005783 IDA
    endoplasmic reticulum GO:0005783 IDA
    endoplasmic reticulum GO:0005783 ISO
    endoplasmic reticulum lumen GO:0005788 ISO
    endoplasmic reticulum membrane GO:0005789 IBA
    smooth endoplasmic reticulum GO:0005790 IDA
    cytosol GO:0005829 IEA
    cytosol GO:0005829 ISO
    ribosome GO:0005840 ISO
    external side of plasma membrane GO:0009897 ISO
    cell surface GO:0009986 IDA
    cell surface GO:0009986 IEA
    membrane GO:0016020 ISO
    sarcoplasmic reticulum GO:0016529 IDA
    protein-containing complex GO:0032991 IDA
    sarcoplasmic reticulum lumen GO:0033018 IEA
    MHC class I peptide loading complex GO:0042824 ISO
    cytolytic granule GO:0044194 IEA
    endoplasmic reticulum quality control compartment GO:0044322 ISO
    perinuclear region of cytoplasm GO:0048471 IDA
    perinuclear region of cytoplasm GO:0048471 ISO
    cortical granule GO:0060473 IEA
    cortical granule GO:0060473 ISS
    collagen-containing extracellular matrix GO:0062023 IDA
    postsynapse GO:0098794 IDA
    glutamatergic synapse GO:0098978 IDA
 Experiment description of studies that identified Calr in exosomes
1
Experiment ID 225
MISEV standards
EM
Biophysical techniques
GAPDH|CD63
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25998041    
Organism Rattus norvegicus
Experiment description Proteomic Analysis of Extracellular Vesicles Released by Adipocytes of Otsuka Long-Evans Tokushima Fatty (OLETF) Rats.
Authors Lee JE, Moon PG, Lee IK, Baek MC
Journal name Protein J
Publication year 2015
Sample Adipocytes
Sample name Adipocytes
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
2
Experiment ID 35
MISEV standards
CEM
Biophysical techniques
TSG101|Alix|CD81|CD63
Enriched markers
HSPA5
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19367702    
Organism Rattus norvegicus
Experiment description Characterization and Comprehensive Proteome Profiling of Exosomes Secreted by Hepatocytes.
Authors Conde-Vancells J, Rodriguez-Suarez E, Embade N, Gil D, Matthiesen R, Valle M, Elortza F, Lu SC, Mato JM, Falcon-Perez JM
Journal name JPR
Publication year 2008
Sample Hepatocytes
Sample name Hepatocytes
Isolation/purification methods Differential centrifugation
Filtration
Sucrose density gradient
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [QTOF]
Western blotting
3
Experiment ID 90
MISEV standards
EM
Biophysical techniques
HSC70|HSP90|TSG101|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
4
Experiment ID 94
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
5
Experiment ID 95
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
6
Experiment ID 96
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
7
Experiment ID 97
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
8
Experiment ID 98
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
 Protein-protein interactions for Calr
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Gabarap  
Reconstituted Complex Rattus norvegicus
Reconstituted Complex Rattus norvegicus
2 Snca  
Affinity Capture-MS Rattus norvegicus
3 Fbxo21  
Affinity Capture-MS Rattus norvegicus
4 Park7 117287
Affinity Capture-MS Rattus norvegicus
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