Gene description for SCARNA5
Gene name small Cajal body-specific RNA 5
Gene symbol SCARNA5
Other names/aliases U87
Species Homo sapiens
 Database cross references - SCARNA5
ExoCarta ExoCarta_677775
Vesiclepedia VP_677775
Entrez Gene 677775
HGNC 32561
MIM 615640
 SCARNA5 identified in sEVs derived from the following tissue/cell type
Endothelial cells 26027894    
 Gene ontology annotations for SCARNA5
Biological Process
    RNA processing GO:0006396 IEA
Subcellular Localization
    nucleolus GO:0005730 IEA
    Cajal body GO:0015030 IMP
 Experiment description of studies that identified SCARNA5 in sEVs
1
Experiment ID 226
MISEV standards
EM
Biophysical techniques
GAPDH|CD9|FLOT1
Enriched markers
LMNA|H2AFX|ATP5A1|TOMM20
Negative markers
Particle analysis
Identified molecule scaRNA
Identification method Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID 26027894    
Organism Homo sapiens
Experiment description "Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting"
Authors "Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar"
Journal name Journal of Extracellular Vesicles
Publication year 2015
Sample Endothelial cells
Sample name HMEC-1
Isolation/purification methods Differential ultracentrifugation
Sucrose density gradient
Flotation density 1.10 g/mL
Molecules identified in the study miRNA
Protein
snoRNA
lncRNA
yRNA
snRNA
mRNA
ncRNA
mtRNA
vtRNA
scaRNA
lincRNA
Methods used in the study Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
Western blotting
 Protein-protein interactions for SCARNA5
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 MOV10 4343
Affinity Capture-RNA Homo sapiens
2 SIRT7  
Affinity Capture-RNA Homo sapiens
3 SHMT2 6472
Affinity Capture-RNA Homo sapiens
4 DDX58 23586
Affinity Capture-RNA Homo sapiens
View the network image/svg+xml
 Pathways in which SCARNA5 is involved
No pathways found





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