Gene description for Picalm
Gene name phosphatidylinositol binding clathrin assembly protein
Gene symbol Picalm
Other names/aliases Calm
Species Rattus norvegicus
 Database cross references - Picalm
ExoCarta ExoCarta_89816
Vesiclepedia VP_89816
Entrez Gene 89816
UniProt O55012  
 Picalm identified in sEVs derived from the following tissue/cell type
Reticulocytes 21828046    
Reticulocytes 21828046    
 Gene ontology annotations for Picalm
Molecular Function
    SNARE binding GO:0000149 IBA
    SNARE binding GO:0000149 IEA
    SNARE binding GO:0000149 IPI
    SNARE binding GO:0000149 ISO
    protein binding GO:0005515 IPI
    1-phosphatidylinositol binding GO:0005545 IBA
    1-phosphatidylinositol binding GO:0005545 IDA
    1-phosphatidylinositol binding GO:0005545 IEA
    phosphatidylinositol-4,5-bisphosphate binding GO:0005546 IBA
    phosphatidylinositol-4,5-bisphosphate binding GO:0005546 IMP
    SH3 domain binding GO:0017124 IDA
    clathrin binding GO:0030276 IDA
    clathrin binding GO:0030276 IEA
    clathrin binding GO:0030276 ISO
    clathrin binding GO:0030276 ISS
    small GTPase binding GO:0031267 IEA
    small GTPase binding GO:0031267 ISO
    clathrin heavy chain binding GO:0032050 IBA
    clathrin heavy chain binding GO:0032050 IEA
    clathrin heavy chain binding GO:0032050 ISO
    identical protein binding GO:0042802 IPI
    tau protein binding GO:0048156 IEA
    tau protein binding GO:0048156 ISO
    low-density lipoprotein particle receptor binding GO:0050750 IEA
    low-density lipoprotein particle receptor binding GO:0050750 ISO
Biological Process
    intracellular iron ion homeostasis GO:0006879 IEA
    intracellular iron ion homeostasis GO:0006879 ISO
    endocytosis GO:0006897 ISO
    receptor-mediated endocytosis GO:0006898 ISO
    receptor-mediated endocytosis GO:0006898 ISS
    vesicle budding from membrane GO:0006900 IEA
    vesicle budding from membrane GO:0006900 ISO
    axonogenesis GO:0007409 IEA
    axonogenesis GO:0007409 IMP
    axonogenesis GO:0007409 ISO
    learning or memory GO:0007611 IEA
    learning or memory GO:0007611 ISO
    negative regulation of gene expression GO:0010629 IEA
    negative regulation of gene expression GO:0010629 ISO
    negative regulation of gene expression GO:0010629 ISS
    synaptic vesicle budding from presynaptic endocytic zone membrane GO:0016185 IBA
    synaptic vesicle maturation GO:0016188 IEA
    synaptic vesicle maturation GO:0016188 ISO
    synaptic vesicle maturation GO:0016188 ISS
    vesicle-mediated transport GO:0016192 IMP
    endosomal transport GO:0016197 IEA
    endosomal transport GO:0016197 ISO
    hemopoiesis GO:0030097 IEA
    hemopoiesis GO:0030097 ISO
    regulation of endocytosis GO:0030100 IMP
    regulation of endocytosis GO:0030100 ISO
    receptor internalization GO:0031623 IEA
    receptor internalization GO:0031623 ISO
    regulation of protein localization GO:0032880 ISO
    vesicle cargo loading GO:0035459 IEA
    vesicle cargo loading GO:0035459 ISO
    vesicle cargo loading GO:0035459 ISS
    positive regulation of DNA-templated transcription GO:0045893 IEA
    positive regulation of DNA-templated transcription GO:0045893 ISO
    positive regulation of Ras protein signal transduction GO:0046579 IEA
    positive regulation of Ras protein signal transduction GO:0046579 ISO
    negative regulation of receptor-mediated endocytosis GO:0048261 IEA
    negative regulation of receptor-mediated endocytosis GO:0048261 ISO
    clathrin coat assembly GO:0048268 IDA
    clathrin coat assembly GO:0048268 IEA
    clathrin coat assembly GO:0048268 ISO
    synaptic vesicle endocytosis GO:0048488 IDA
    synaptic vesicle endocytosis GO:0048488 IMP
    dendrite morphogenesis GO:0048813 IEA
    dendrite morphogenesis GO:0048813 IMP
    dendrite morphogenesis GO:0048813 ISO
    positive regulation of axonogenesis GO:0050772 IMP
    regulation of protein transport GO:0051223 IMP
    multicellular organismal-level iron ion homeostasis GO:0060586 IEA
    multicellular organismal-level iron ion homeostasis GO:0060586 ISO
    multicellular organismal-level iron ion homeostasis GO:0060586 ISS
    clathrin-dependent endocytosis GO:0072583 IBA
    clathrin-dependent endocytosis GO:0072583 IEA
    clathrin-dependent endocytosis GO:0072583 ISO
    clathrin-dependent endocytosis GO:0072583 ISS
    regulation of vesicle size GO:0097494 IEA
    regulation of vesicle size GO:0097494 ISO
    membrane bending GO:0097753 IEA
    membrane bending GO:0097753 ISO
    amyloid-beta clearance by transcytosis GO:0150093 IEA
    amyloid-beta clearance by transcytosis GO:0150093 ISO
    regulation of synaptic vesicle endocytosis GO:1900242 IMP
    positive regulation of synaptic vesicle endocytosis GO:1900244 IMP
    regulation of amyloid-beta formation GO:1902003 ISO
    positive regulation of amyloid-beta formation GO:1902004 IEA
    positive regulation of amyloid-beta formation GO:1902004 ISO
    positive regulation of amyloid-beta formation GO:1902004 ISS
    regulation of synaptic vesicle transport GO:1902803 IMP
    regulation of amyloid precursor protein catabolic process GO:1902991 ISO
    regulation of amyloid precursor protein catabolic process GO:1902991 ISS
    positive regulation of amyloid precursor protein catabolic process GO:1902993 ISO
    positive regulation of amyloid precursor protein catabolic process GO:1902993 ISS
    negative regulation of protein localization to plasma membrane GO:1903077 IEA
    negative regulation of protein localization to plasma membrane GO:1903077 ISO
    positive regulation of dendrite extension GO:1903861 IMP
    negative regulation of protein localization to cell surface GO:2000009 IEA
    negative regulation of protein localization to cell surface GO:2000009 ISO
    regulation of terminal button organization GO:2000331 IMP
    positive regulation of synaptic vesicle clustering GO:2000809 IMP
Subcellular Localization
    nucleus GO:0005634 IEA
    nucleus GO:0005634 ISO
    endosome GO:0005768 IDA
    early endosome GO:0005769 IEA
    early endosome GO:0005769 ISO
    Golgi apparatus GO:0005794 IEA
    plasma membrane GO:0005886 IDA
    plasma membrane GO:0005886 ISO
    clathrin-coated pit GO:0005905 IBA
    clathrin-coated pit GO:0005905 ISO
    clathrin-coated pit GO:0005905 ISS
    synaptic vesicle GO:0008021 IBA
    synaptic vesicle GO:0008021 IDA
    cell surface GO:0009986 IEA
    cell surface GO:0009986 ISO
    postsynaptic density GO:0014069 IDA
    membrane GO:0016020 IMP
    clathrin coat of coated pit GO:0030132 IEA
    clathrin coat of coated pit GO:0030132 ISO
    clathrin-coated vesicle GO:0030136 IBA
    clathrin-coated vesicle GO:0030136 IDA
    clathrin-coated vesicle GO:0030136 IEA
    clathrin-coated vesicle GO:0030136 ISO
    vesicle GO:0031982 ISO
    vesicle GO:0031982 ISS
    presynaptic membrane GO:0042734 IDA
    neuronal cell body GO:0043025 IDA
    neuronal cell body GO:0043025 IEA
    neuronal cell body GO:0043025 ISO
    neuronal cell body GO:0043025 ISS
    intracellular membrane-bounded organelle GO:0043231 ISO
    postsynaptic membrane GO:0045211 IDA
    perinuclear region of cytoplasm GO:0048471 IEA
    perinuclear region of cytoplasm GO:0048471 ISO
    endosome to plasma membrane transport vesicle GO:0070381 IEA
    endosome to plasma membrane transport vesicle GO:0070381 ISO
    neurofibrillary tangle GO:0097418 IEA
    neurofibrillary tangle GO:0097418 ISO
    neurofibrillary tangle GO:0097418 ISS
    Schaffer collateral - CA1 synapse GO:0098685 IDA
    parallel fiber to Purkinje cell synapse GO:0098688 IDA
    postsynapse GO:0098794 IDA
    postsynaptic endocytic zone GO:0098843 IDA
    postsynaptic endocytic zone GO:0098843 IMP
    extrinsic component of presynaptic endocytic zone membrane GO:0098894 IBA
    extrinsic component of presynaptic endocytic zone membrane GO:0098894 IDA
 Experiment description of studies that identified Picalm in sEVs
1
Experiment ID 95
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
2
Experiment ID 97
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
 Protein-protein interactions for Picalm
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Ehd2 361512
Reconstituted Complex Rattus norvegicus
View the network image/svg+xml



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