Gene description for HMGXB4
Gene name HMG box domain containing 4
Gene symbol HMGXB4
Other names/aliases HMG2L1
HMGBCG
THC211630
Species Homo sapiens
 Database cross references - HMGXB4
ExoCarta ExoCarta_10042
Vesiclepedia VP_10042
Entrez Gene 10042
HGNC 5003
MIM 604702
UniProt Q9UGU5  
 HMGXB4 identified in sEVs derived from the following tissue/cell type
Retinal pigment epithelial cells 35333565    
Retinal pigment epithelial cells 35333565    
 Gene ontology annotations for HMGXB4
Molecular Function
    DNA binding GO:0003677 IEA
    protein binding GO:0005515 IPI
    identical protein binding GO:0042802 IPI
Biological Process
    endosome to lysosome transport GO:0008333 NAS
    Wnt signaling pathway GO:0016055 IEA
    negative regulation of Wnt signaling pathway GO:0030178 ISS
Subcellular Localization
    NURF complex GO:0016589 IDA
 Experiment description of studies that identified HMGXB4 in sEVs
1
Experiment ID 834
MISEV standards
EM
Biophysical techniques
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
CANX
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35333565    
Organism Homo sapiens
Experiment description LAMP2A regulates the loading of proteins into exosomes
Authors "Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name Sci Adv
Publication year 2022
Sample Retinal pigment epithelial cells
Sample name ARPE-19
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 835
MISEV standards
EM
Biophysical techniques
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
CANX
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35333565    
Organism Homo sapiens
Experiment description LAMP2A regulates the loading of proteins into exosomes
Authors "Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name Sci Adv
Publication year 2022
Sample Retinal pigment epithelial cells
Sample name ARPE-19
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
 Protein-protein interactions for HMGXB4
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 HIST2H2BE 8349
Affinity Capture-MS Homo sapiens
2 GATAD2B 57459
Affinity Capture-MS Homo sapiens
3 MAGEA3  
Affinity Capture-MS Homo sapiens
4 KPNA1 3836
Affinity Capture-MS Homo sapiens
5 ZNF296  
Affinity Capture-MS Homo sapiens
6 Nfyc 18046
Affinity Capture-MS Mus musculus
7 HIST1H2BG 8339
Proximity Label-MS Homo sapiens
8 SMARCE1 6605
Co-fractionation Homo sapiens
9 BRD2  
Affinity Capture-MS Homo sapiens
10 SAP30 8819
Affinity Capture-MS Homo sapiens
11 RABGAP1L 9910
Affinity Capture-MS Homo sapiens
12 CENPA  
Proximity Label-MS Homo sapiens
13 NCOR1  
Co-fractionation Homo sapiens
14 MTF2  
Affinity Capture-MS Homo sapiens
15 KIF22  
Affinity Capture-MS Homo sapiens
16 CHAF1A  
Affinity Capture-MS Homo sapiens
17 SMARCA1 6594
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
18 CDK2AP1  
Affinity Capture-MS Homo sapiens
19 ARID4B  
Affinity Capture-MS Homo sapiens
20 ZNF512B  
Affinity Capture-MS Homo sapiens
21 SIN3B  
Affinity Capture-MS Homo sapiens
22 NR1H2  
Two-hybrid Homo sapiens
23 RAD51  
Affinity Capture-MS Homo sapiens
24 EED  
Affinity Capture-MS Homo sapiens
25 ZNF219  
Affinity Capture-MS Homo sapiens
26 PHF1  
Affinity Capture-MS Homo sapiens
27 MYCN  
Affinity Capture-MS Homo sapiens
28 CHD3 1107
Affinity Capture-MS Homo sapiens
29 MTA2 9219
Affinity Capture-MS Homo sapiens
30 HAT1 8520
Affinity Capture-MS Homo sapiens
31 H2AFZ 3015
Affinity Capture-MS Homo sapiens
32 JMJD6 23210
Two-hybrid Homo sapiens
33 SHPRH  
Affinity Capture-MS Homo sapiens
34 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
35 Rock1  
Affinity Capture-MS Mus musculus
36 C17orf49 124944
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
37 CBX3 11335
Proximity Label-MS Homo sapiens
38 LIN52  
Affinity Capture-MS Homo sapiens
39 FOXK2  
Affinity Capture-MS Homo sapiens
40 BPTF 2186
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
41 SYNCRIP 10492
Affinity Capture-MS Homo sapiens
42 BRMS1L  
Affinity Capture-MS Homo sapiens
43 MYBL2 4605
Affinity Capture-MS Homo sapiens
44 HJURP  
Affinity Capture-MS Homo sapiens
45 PML 5371
Affinity Capture-MS Homo sapiens
46 SUDS3  
Affinity Capture-MS Homo sapiens
47 PHF12  
Affinity Capture-MS Homo sapiens
48 Cep131  
Affinity Capture-MS Mus musculus
49 BCL11A 53335
Affinity Capture-MS Homo sapiens
50 HABP4  
Two-hybrid Homo sapiens
51 SMARCA5 8467
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
52 MX1 4599
Two-hybrid Homo sapiens
53 MECP2 4204
Affinity Capture-MS Homo sapiens
54 YY1 7528
Proximity Label-MS Homo sapiens
55 SUZ12  
Affinity Capture-MS Homo sapiens
56 HIST3H3 8290
Protein-peptide Homo sapiens
57 RRAS 6237
Affinity Capture-MS Homo sapiens
58 LIN9  
Affinity Capture-MS Homo sapiens
59 DNAJC24  
Affinity Capture-MS Homo sapiens
60 EPM2A  
Two-hybrid Homo sapiens
61 Tpx2  
Affinity Capture-MS Mus musculus
62 CNTROB  
Affinity Capture-MS Homo sapiens
63 MBD2 8932
Affinity Capture-MS Homo sapiens
64 TBCA 6902
Affinity Capture-MS Homo sapiens
65 Mad2l1 56150
Affinity Capture-MS Mus musculus
66 CHD5 26038
Affinity Capture-MS Homo sapiens
67 BRD3 8019
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
68 RBBP4 5928
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
69 ARAP1 116985
Affinity Capture-MS Homo sapiens
70 TNNT1  
Two-hybrid Homo sapiens
71 UROD 7389
Two-hybrid Homo sapiens
72 GATAD2A 54815
Affinity Capture-MS Homo sapiens
73 LLGL2 3993
Affinity Capture-MS Homo sapiens
74 SAP130  
Affinity Capture-MS Homo sapiens
75 SIN3A  
Affinity Capture-MS Homo sapiens
76 MBD3 53615
Affinity Capture-MS Homo sapiens
77 MTA1 9112
Affinity Capture-MS Homo sapiens
78 CHD4 1108
Affinity Capture-MS Homo sapiens
79 KIFAP3 22920
Affinity Capture-MS Homo sapiens
80 TSC22D1 8848
Two-hybrid Homo sapiens
81 EZH2  
Affinity Capture-MS Homo sapiens
82 MTA3 57504
Affinity Capture-MS Homo sapiens
83 GATAD1  
Affinity Capture-MS Homo sapiens
84 CHAF1B  
Affinity Capture-MS Homo sapiens
85 PWWP2A  
Affinity Capture-MS Homo sapiens
86 SSRP1 6749
Affinity Capture-MS Homo sapiens
87 LIN37  
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which HMGXB4 is involved
No pathways found





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