Gene ontology annotations for Slc25a5
Experiment description of studies that identified Slc25a5 in sEVs
1
Experiment ID
907
MISEV standards
✔
EM
Biophysical techniques
✔
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
✔
HSPA5
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
37309723
Organism
Mus musculus
Experiment description
Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors
"Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name
Proteomics
Publication year
2023
Sample
Colon cancer cells
Sample name
C26
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
2
Experiment ID
15
MISEV standards
✔
EM
Biophysical techniques
✔
CD63
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
mrna
Identification method
Microarray
PubMed ID
17486113
Organism
Mus musculus Homo sapiens
Experiment description
Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Authors
"Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO"
Journal name
NCB
Publication year
2007
Sample
Mast cells
Sample name
MC9 Bone marrow-derived mast cells HMC-1
Isolation/purification methods
Filtration Ultracentrifugation Sucrose density gradient
Flotation density
1.11-1.21 g/mL
Molecules identified in the study
Protein mRNA miRNA
Methods used in the study
Mass spectrometry [MALDI TOF] Western blotting Microarray miRCURY LNA Array
3
Experiment ID
39
MISEV standards
✔
IEM
Biophysical techniques
✔
TSG101|HSC70|FLOT1
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
15210972
Organism
Mus musculus
Experiment description
Cells release prions in association with exosomes.
Authors
"Fevrier B, Vilette D, Archer F, Loew D, Faigle W, Vidal M, Laude H, Raposo G"
Journal name
PNAS
Publication year
2004
Sample
Mov neuroglial cells
Sample name
Mov neuroglial cell
Isolation/purification methods
Differential centrifugation Sucrose density gradient
Flotation density
1.14 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [QSTAR] Western blotting Immunoelectron Microscopy
4
Experiment ID
188
MISEV standards
✔
EM
Biophysical techniques
✔
GAPDH|UCHL1|HSP90
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
19351151
Organism
Mus musculus
Experiment description
Characterization of vesicles secreted from insulinoma NIT-1 cells.
Authors
"Lee HS, Jeong J, Lee KJ."
Journal name
J Proteome Res
Publication year
2009
Sample
Pancreatic cells
Sample name
Pancreatic beta cell (NIT-1)
Isolation/purification methods
Differential centrifugation Sucrose density gradient
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
5
Experiment ID
908
MISEV standards
✔
EM
Biophysical techniques
✔
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
✔
HSPA5
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
37309723
Organism
Mus musculus
Experiment description
Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors
"Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name
Proteomics
Publication year
2023
Sample
T-cell lymphoma cells
Sample name
EL4
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
Protein-protein interactions for Slc25a5
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
Nphs2
Affinity Capture-MS
Mus musculus
2
Cbx1
Affinity Capture-MS
Mus musculus
3
Ubc
Reconstituted Complex
Mus musculus
4
Slc25a4
11739
Cross-Linking-MS (XL-MS)
Mus musculus
Cross-Linking-MS (XL-MS)
Mus musculus
Cross-Linking-MS (XL-MS)
Mus musculus
5
Hspb2
69253
Affinity Capture-MS
Mus musculus
6
Eed
Affinity Capture-MS
Mus musculus
7
Psma3
19167
Co-fractionation
Mus musculus
8
Atxn1
Proximity Label-MS
Mus musculus
9
Kctd13
Affinity Capture-MS
Mus musculus
10
Thrb
Affinity Capture-MS
Mus musculus
11
Cox6c
Co-fractionation
Mus musculus
12
Tfe3
Affinity Capture-MS
Mus musculus
13
Atp5l
Co-fractionation
Mus musculus
14
Ywhae
22627
Affinity Capture-MS
Mus musculus
15
Mettl21e
Affinity Capture-MS
Mus musculus
16
Tmem173
Proximity Label-MS
Mus musculus
17
Slc25a5
11740
Cross-Linking-MS (XL-MS)
Mus musculus
Cross-Linking-MS (XL-MS)
Mus musculus
Cross-Linking-MS (XL-MS)
Mus musculus
Cross-Linking-MS (XL-MS)
Mus musculus
18
Cbx3
12417
Affinity Capture-MS
Mus musculus
19
Sdhb
67680
Co-fractionation
Mus musculus
20
Mapt
Affinity Capture-MS
Mus musculus
21
Stau1
Co-fractionation
Mus musculus
22
Atp5c1
Co-fractionation
Mus musculus
23
Fancd2
Affinity Capture-MS
Mus musculus
24
Mdh2
17448
Co-fractionation
Mus musculus
25
Lipc
Affinity Capture-MS
Mus musculus
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Pathways in which Slc25a5 is involved