Gene description for Tcf4
Gene name transcription factor 4
Gene symbol Tcf4
Other names/aliases 5730422P05Rik
ASP-I2
E2-2
E2.2
ITF-2
ITF-2b
ITF2
ME2
MITF-2A
MITF-2B
SEF-2
SEF2
SEF2-1
TFE
Tcf-4
bHLHb19
Species Mus musculus
 Database cross references - Tcf4
ExoCarta ExoCarta_21413
Vesiclepedia VP_21413
Entrez Gene 21413
UniProt Q60722  
 Tcf4 identified in sEVs derived from the following tissue/cell type
Mast cells 17486113    
 Gene ontology annotations for Tcf4
Molecular Function
    RNA polymerase II transcription regulatory region sequence-specific DNA binding GO:0000977 IMP
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IBA
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IDA
    RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 ISO
    DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981 IBA
    DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981 IDA
    TFIIB-class transcription factor binding GO:0001093 IDA
    DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 IDA
    DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 IMP
    DNA binding GO:0003677 IDA
    DNA binding GO:0003677 ISO
    chromatin binding GO:0003682 IDA
    double-stranded DNA binding GO:0003690 ISO
    DNA-binding transcription factor activity GO:0003700 ISO
    transcription corepressor activity GO:0003714 IDA
    protein binding GO:0005515 IPI
    beta-catenin binding GO:0008013 ISO
    identical protein binding GO:0042802 IMP
    identical protein binding GO:0042802 ISO
    bHLH transcription factor binding GO:0043425 ISO
    protein heterodimerization activity GO:0046982 IDA
    E-box binding GO:0070888 IDA
    sequence-specific double-stranded DNA binding GO:1990837 ISO
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IDA
    regulation of DNA-templated transcription GO:0006355 IDA
    regulation of transcription by RNA polymerase II GO:0006357 IBA
    nervous system development GO:0007399 IEA
    negative regulation of gene expression GO:0010629 IDA
    negative regulation of angiogenesis GO:0016525 IDA
    cell differentiation GO:0030154 IEA
    endothelial cell activation GO:0042118 IDA
    positive regulation of neuron differentiation GO:0045666 IDA
    positive regulation of DNA-templated transcription GO:0045893 ISO
    positive regulation of transcription by RNA polymerase II GO:0045944 IDA
    positive regulation of transcription by RNA polymerase II GO:0045944 IMP
    positive regulation of transcription by RNA polymerase II GO:0045944 ISO
    protein-DNA complex assembly GO:0065004 IDA
    regulation of vascular endothelial growth factor signaling pathway GO:1900746 IDA
Subcellular Localization
    chromatin GO:0000785 IBA
    chromatin GO:0000785 ISO
    nucleus GO:0005634 IDA
    nucleus GO:0005634 ISO
    transcription regulator complex GO:0005667 IBA
    transcription regulator complex GO:0005667 IDA
    beta-catenin-TCF7L2 complex GO:0070369 ISO
    beta-catenin-TCF complex GO:1990907 ISO
 Experiment description of studies that identified Tcf4 in sEVs
1
Experiment ID 15
MISEV standards
EM
Biophysical techniques
CD63
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 17486113    
Organism Mus musculus
Homo sapiens
Experiment description Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Authors "Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO"
Journal name NCB
Publication year 2007
Sample Mast cells
Sample name MC9
Bone marrow-derived mast cells
HMC-1
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.11-1.21 g/mL
Molecules identified in the study Protein
mRNA
miRNA
Methods used in the study Mass spectrometry [MALDI TOF]
Western blotting
Microarray
miRCURY LNA Array
 Protein-protein interactions for Tcf4
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Wnt11 22411
Phenotypic Suppression Mus musculus
2 Myf5  
Affinity Capture-Western Mus musculus
3 Hras 15461
Phenotypic Suppression Mus musculus
4 Ascl3  
Two-hybrid Mus musculus
5 Lmo2  
Two-hybrid Mus musculus
6 Dot1l  
Affinity Capture-Western Mus musculus
7 ASCL3  
Two-hybrid Homo sapiens
8 Hand2  
Reconstituted Complex Mus musculus
9 Ctnnb1 12387
Phenotypic Suppression Mus musculus
Affinity Capture-Western Mus musculus
Two-hybrid Mus musculus
10 Tcf4 21413
Reconstituted Complex Mus musculus
Reconstituted Complex Mus musculus
11 Twist1  
Proximity Label-MS Mus musculus
Reconstituted Complex Mus musculus
12 Jun  
Affinity Capture-Western Mus musculus
13 Tcf12 21406
Reconstituted Complex Mus musculus
Reconstituted Complex Mus musculus
14 Tcf3  
Reconstituted Complex Mus musculus
Reconstituted Complex Mus musculus
15 Id1  
Two-hybrid Mus musculus
View the network image/svg+xml
 Pathways in which Tcf4 is involved
PathwayEvidenceSource
Developmental Biology IEA Reactome
Myogenesis IEA Reactome





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