Gene description for ATP6V0D2
Gene name ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2
Gene symbol ATP6V0D2
Other names/aliases ATP6D2
VMA6
Species Homo sapiens
 Database cross references - ATP6V0D2
ExoCarta ExoCarta_245972
Vesiclepedia VP_245972
Entrez Gene 245972
HGNC 18266
UniProt Q8N8Y2  
 ATP6V0D2 identified in sEVs derived from the following tissue/cell type
Urine 19056867    
 Gene ontology annotations for ATP6V0D2
Molecular Function
    protein binding GO:0005515 IPI
    proton-transporting ATPase activity, rotational mechanism GO:0046961 IEA
Biological Process
    vacuolar transport GO:0007034 IBA
    vacuolar acidification GO:0007035 IBA
    regulation of macroautophagy GO:0016241 NAS
    proton transmembrane transport GO:1902600 IEA
Subcellular Localization
    lysosomal membrane GO:0005765 TAS
    early endosome GO:0005769 IBA
    endosome membrane GO:0010008 TAS
    membrane GO:0016020 IDA
    apical plasma membrane GO:0016324 IDA
    vacuolar proton-transporting V-type ATPase complex GO:0016471 IBA
    vacuolar proton-transporting V-type ATPase complex GO:0016471 IDA
    phagocytic vesicle membrane GO:0030670 TAS
    proton-transporting V-type ATPase, V0 domain GO:0033179 IEA
    plasma membrane proton-transporting V-type ATPase complex GO:0033181 IBA
    extracellular exosome GO:0070062 HDA
 Experiment description of studies that identified ATP6V0D2 in sEVs
1
Experiment ID 63
MISEV standards
Biophysical techniques
AQP2
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19056867    
Organism Homo sapiens
Experiment description Large-scale proteomics and phosphoproteomics of urinary exosomes.
Authors "Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA"
Journal name JASN
Publication year 2009
Sample Urine
Sample name Urine - Normal
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
 Protein-protein interactions for ATP6V0D2
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 CCDC115 84317
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
2 ATP6V0D1 9114
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
3 ARID5A  
Two-hybrid Homo sapiens
4 ATP6V0A4 50617
Affinity Capture-MS Homo sapiens
5 RUSC1  
Two-hybrid Homo sapiens
6 SLC2A1 6513
Affinity Capture-MS Homo sapiens
7 MIP  
Affinity Capture-MS Homo sapiens
8 ATP6V1F 9296
Affinity Capture-MS Homo sapiens
9 ATP6AP1 537
Affinity Capture-MS Homo sapiens
10 SERINC2 347735
Affinity Capture-MS Homo sapiens
11 LGALS1 3956
Affinity Capture-MS Homo sapiens
12 CDCA3 83461
Affinity Capture-MS Homo sapiens
13 CENPP  
Two-hybrid Homo sapiens
14 RBM15B  
Two-hybrid Homo sapiens
15 IKZF3  
Two-hybrid Homo sapiens
16 KIAA2013 90231
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
17 RIBC1  
Two-hybrid Homo sapiens
18 REL 5966
Two-hybrid Homo sapiens
19 FKBP15 23307
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
20 MTUS2 23281
Affinity Capture-MS Homo sapiens
21 INCA1  
Two-hybrid Homo sapiens
22 TMEM199  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
23 ATP6AP2 10159
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
24 TMEM53  
Affinity Capture-MS Homo sapiens
25 SLC34A2 10568
Affinity Capture-MS Homo sapiens
26 ATP6V1G2  
Affinity Capture-MS Homo sapiens
27 POMC  
Two-hybrid Homo sapiens
28 GPRC5D  
Affinity Capture-MS Homo sapiens
29 SEPT2 4735
Two-hybrid Homo sapiens
30 SLC6A1  
Affinity Capture-MS Homo sapiens
31 RPS3 6188
Two-hybrid Homo sapiens
32 CRX  
Two-hybrid Homo sapiens
33 BLK 640
Affinity Capture-MS Homo sapiens
34 TCIRG1 10312
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
35 CERS2 29956
Affinity Capture-MS Homo sapiens
36 ATP6V0C 527
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
37 COX11  
Affinity Capture-MS Homo sapiens
38 NDUFB8 4714
Two-hybrid Homo sapiens
39 ATP6V0A1 535
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
40 PPAPDC1A  
Affinity Capture-MS Homo sapiens
41 ATP6V1B2 526
Affinity Capture-MS Homo sapiens
42 YES1 7525
Affinity Capture-MS Homo sapiens
43 MEOX2  
Two-hybrid Homo sapiens
44 ATP6V0A2 23545
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
45 AMOT 154796
Affinity Capture-MS Homo sapiens
46 AGO3  
Two-hybrid Homo sapiens
47 KRAS 3845
Synthetic Lethality Homo sapiens
48 ADRM1 11047
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
49 VMA21  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
50 NICN1  
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
51 FAM206A  
Affinity Capture-MS Homo sapiens
52 PHF12  
Two-hybrid Homo sapiens
53 ATP6V1B1 525
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
54 ZNF474  
Two-hybrid Homo sapiens
55 SLC14A1  
Affinity Capture-MS Homo sapiens
56 TMEM185A  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
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