Gene description for HELLS
Gene name helicase, lymphoid-specific
Gene symbol HELLS
Other names/aliases LSH
Nbla10143
PASG
SMARCA6
Species Homo sapiens
 Database cross references - HELLS
ExoCarta ExoCarta_3070
Vesiclepedia VP_3070
Entrez Gene 3070
HGNC 4861
MIM 603946
UniProt Q9NRZ9  
 HELLS identified in sEVs derived from the following tissue/cell type
Thymus 23844026    
 Gene ontology annotations for HELLS
Molecular Function
    chromatin binding GO:0003682 IBA
    helicase activity GO:0004386 IEA
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    hydrolase activity GO:0016787 IEA
Biological Process
    urogenital system development GO:0001655 IEA
    kidney development GO:0001822 ISS
    DNA methylation-dependent constitutive heterochromatin formation GO:0006346 IBA
    DNA methylation-dependent constitutive heterochromatin formation GO:0006346 ISS
    apoptotic process GO:0006915 IEA
    pericentric heterochromatin formation GO:0031508 IBA
    pericentric heterochromatin formation GO:0031508 ISS
    negative regulation of gene expression via chromosomal CpG island methylation GO:0044027 IBA
    negative regulation of gene expression via chromosomal CpG island methylation GO:0044027 ISS
    lymphocyte proliferation GO:0046651 IBA
    lymphocyte proliferation GO:0046651 ISS
    cell division GO:0051301 IEA
    chromosomal DNA methylation maintenance following DNA replication GO:0141119 IEA
    cellular response to leukemia inhibitory factor GO:1990830 IEA
    negative regulation of intrinsic apoptotic signaling pathway GO:2001243 IEA
Subcellular Localization
    chromosome, centromeric region GO:0000775 ISS
    nucleus GO:0005634 IBA
    pericentric heterochromatin GO:0005721 IBA
    pericentric heterochromatin GO:0005721 ISS
 Experiment description of studies that identified HELLS in sEVs
1
Experiment ID 217
MISEV standards
EM
Biophysical techniques
TSG101|CD81|CD9|CD63
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors "Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for HELLS
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 CDC14B 8555
Proximity Label-MS Homo sapiens
2 UGGT2 55757
Affinity Capture-MS Homo sapiens
3 LYPD3 27076
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
4 FOXA3  
Affinity Capture-MS Homo sapiens
5 HDAC2 3066
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
6 Smc1a  
Affinity Capture-MS Mus musculus
7 COIL  
Proximity Label-MS Homo sapiens
8 DNAJC8 22826
Proximity Label-MS Homo sapiens
9 VAPA 9218
Affinity Capture-MS Homo sapiens
10 HCST  
Affinity Capture-MS Homo sapiens
11 LHX2  
Proximity Label-MS Homo sapiens
12 USP5 8078
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
13 HIST1H2BG 8339
Proximity Label-MS Homo sapiens
14 LAMP2 3920
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
15 GCN1L1 10985
Co-fractionation Homo sapiens
16 APP 351
Reconstituted Complex Homo sapiens
17 CENPA  
Proximity Label-MS Homo sapiens
18 ANKRD50 57182
Affinity Capture-MS Homo sapiens
19 APEX1 328
Affinity Capture-RNA Homo sapiens
Proximity Label-MS Homo sapiens
20 DDX23 9416
Proximity Label-MS Homo sapiens
21 WDR76  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-purification Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
22 SV2A 9900
Affinity Capture-MS Homo sapiens
23 CHODL 140578
Affinity Capture-MS Homo sapiens
24 FBXW7  
Affinity Capture-MS Homo sapiens
25 PVR 5817
Affinity Capture-MS Homo sapiens
26 F9 2158
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
27 RCBTB2  
Affinity Capture-MS Homo sapiens
28 MAD2L2 10459
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
29 SEMA4C 54910
Affinity Capture-MS Homo sapiens
30 GTSF1L  
Two-hybrid Homo sapiens
31 TEKT2  
Affinity Capture-MS Homo sapiens
32 SLX4  
Affinity Capture-MS Homo sapiens
33 WDR5 11091
Co-fractionation Homo sapiens
34 KIF14 9928
Affinity Capture-MS Homo sapiens
35 SERTAD2 9792
Two-hybrid Homo sapiens
36 S100A2 6273
Affinity Capture-MS Homo sapiens
37 MIB1 57534
Proximity Label-MS Homo sapiens
38 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
39 CUL3 8452
Affinity Capture-MS Homo sapiens
40 PARK2  
Affinity Capture-MS Homo sapiens
41 PDGFRB 5159
Affinity Capture-MS Homo sapiens
42 TMEM150A  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
43 SLC39A9 55334
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
44 USP11 8237
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
45 CBX3 11335
Proximity Label-MS Homo sapiens
46 Ppp2ca 19052
Affinity Capture-MS Mus musculus
47 VCP 7415
Affinity Capture-MS Homo sapiens
48 NTRK1 4914
Affinity Capture-MS Homo sapiens
49 RPL31 6160
Proximity Label-MS Homo sapiens
50 GPR182  
Affinity Capture-MS Homo sapiens
51 TEAD2  
Affinity Capture-MS Homo sapiens
52 MEOX2  
Two-hybrid Homo sapiens
53 HIST1H1C 3006
Affinity Capture-MS Homo sapiens
54 TMEM171  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
55 CEBPA  
Protein-peptide Homo sapiens
56 SRPK1 6732
Affinity Capture-MS Homo sapiens
57 UBXN6 80700
Affinity Capture-MS Homo sapiens
58 CD3EAP  
Proximity Label-MS Homo sapiens
59 TPX2  
Affinity Capture-MS Homo sapiens
60 NUMA1 4926
Affinity Capture-MS Homo sapiens
61 HSPA5 3309
Affinity Capture-MS Homo sapiens
62 CYB5B 80777
Affinity Capture-MS Homo sapiens
63 S100P 6286
Affinity Capture-MS Homo sapiens
64 HIST1H3A 8350
Proximity Label-MS Homo sapiens
65 FURIN 5045
Affinity Capture-MS Homo sapiens
66 SMARCAD1  
Affinity Capture-MS Homo sapiens
67 LMNB1 4001
Proximity Label-MS Homo sapiens
68 CD79B 974
Affinity Capture-MS Homo sapiens
69 EEF2 1938
Affinity Capture-MS Homo sapiens
70 CMKLR1 1240
Affinity Capture-MS Homo sapiens
71 FOXG1  
Affinity Capture-MS Homo sapiens
72 NR3C1 2908
Proximity Label-MS Homo sapiens
73 DNAJC17  
Proximity Label-MS Homo sapiens
74 FOXL1  
Affinity Capture-MS Homo sapiens
75 METTL21B  
Affinity Capture-MS Homo sapiens
76 RIPK4  
Affinity Capture-MS Homo sapiens
77 GTF3C4 9329
Affinity Capture-MS Homo sapiens
78 HNRNPCL2 440563
Affinity Capture-MS Homo sapiens
79 DNMT3B  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
80 MYC  
Affinity Capture-MS Homo sapiens
81 USP47 55031
Affinity Capture-MS Homo sapiens
82 EMC2 9694
Affinity Capture-MS Homo sapiens
83 DNAJC9 23234
Proximity Label-MS Homo sapiens
84 EGFR 1956
Affinity Capture-MS Homo sapiens
85 RPAP3 79657
Affinity Capture-MS Homo sapiens
86 DPM2 8818
Affinity Capture-MS Homo sapiens
87 PRKY  
Affinity Capture-MS Homo sapiens
88 FOXQ1  
Affinity Capture-MS Homo sapiens
89 LMNA 4000
Proximity Label-MS Homo sapiens
90 BRD3 8019
Affinity Capture-MS Homo sapiens
91 CCDC8  
Affinity Capture-MS Homo sapiens
92 NXPE2  
Affinity Capture-MS Homo sapiens
93 CBX4  
Affinity Capture-MS Homo sapiens
94 MAGEA8  
Affinity Capture-MS Homo sapiens
95 GYPA  
Affinity Capture-MS Homo sapiens
96 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
97 PARP1 142
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
98 C3AR1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
99 LDLRAD1  
Affinity Capture-MS Homo sapiens
100 Fbl 14113
Affinity Capture-MS Mus musculus
101 CCT8L2  
Affinity Capture-MS Homo sapiens
102 RPAP2  
Affinity Capture-MS Homo sapiens
103 HDAC1 3065
Co-localization Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
104 MAGEA9  
Affinity Capture-MS Homo sapiens
105 DDX58 23586
Affinity Capture-RNA Homo sapiens
106 E2F3  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
107 NEDD1 121441
Affinity Capture-MS Homo sapiens
108 SNW1 22938
Affinity Capture-MS Homo sapiens
109 C9orf72  
Affinity Capture-MS Homo sapiens
110 DNMT1 1786
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
111 FOXE1  
Affinity Capture-MS Homo sapiens
112 RPA3 6119
Proximity Label-MS Homo sapiens
113 EP300 2033
Affinity Capture-MS Homo sapiens
114 CDC5L 988
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which HELLS is involved
PathwayEvidenceSource
Signal Transduction TAS Reactome
Signaling by TGFB family members TAS Reactome
Signaling by TGFBR3 TAS Reactome
TGFBR3 expression TAS Reactome





Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here