Gene description for Tdg
Gene name thymine DNA glycosylase
Gene symbol Tdg
Other names/aliases E130317C12Rik
JZA-3
Jza1
Species Mus musculus
 Database cross references - Tdg
ExoCarta ExoCarta_21665
Vesiclepedia VP_21665
Entrez Gene 21665
UniProt P56581  
 Tdg identified in sEVs derived from the following tissue/cell type
Mast cells 17486113    
 Gene ontology annotations for Tdg
Molecular Function
    magnesium ion binding GO:0000287 IEA
    magnesium ion binding GO:0000287 ISO
    nucleic acid binding GO:0003676 ISO
    DNA binding GO:0003677 IDA
    double-stranded DNA binding GO:0003690 ISO
    double-stranded DNA binding GO:0003690 ISS
    transcription coregulator activity GO:0003712 IGI
    uracil DNA N-glycosylase activity GO:0004844 IBA
    uracil DNA N-glycosylase activity GO:0004844 ISO
    protein kinase C binding GO:0005080 IPI
    protein binding GO:0005515 IPI
    protein binding GO:0005515 ISS
    ATP binding GO:0005524 IEA
    ATP binding GO:0005524 ISO
    pyrimidine-specific mismatch base pair DNA N-glycosylase activity GO:0008263 IBA
    pyrimidine-specific mismatch base pair DNA N-glycosylase activity GO:0008263 ISO
    DNA N-glycosylase activity GO:0019104 IDA
    DNA N-glycosylase activity GO:0019104 ISO
    protein domain specific binding GO:0019904 IEA
    protein domain specific binding GO:0019904 ISO
    mismatched DNA binding GO:0030983 ISO
    mismatched DNA binding GO:0030983 ISS
    sodium ion binding GO:0031402 IEA
    sodium ion binding GO:0031402 ISO
    chloride ion binding GO:0031404 IEA
    chloride ion binding GO:0031404 ISO
    SUMO binding GO:0032183 IPI
    SUMO binding GO:0032183 ISO
    G/U mismatch-specific uracil-DNA glycosylase activity GO:0043739 IEA
    G/U mismatch-specific uracil-DNA glycosylase activity GO:0043739 ISO
    DNA-binding transcription factor binding GO:0140297 IEA
    DNA-binding transcription factor binding GO:0140297 ISO
    G/T mismatch-specific thymine-DNA glycosylase activity GO:0141016 IEA
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IGI
    negative regulation of transcription by RNA polymerase II GO:0000122 IMP
    negative regulation of transcription by RNA polymerase II GO:0000122 ISO
    base-excision repair GO:0006284 IDA
    base-excision repair GO:0006284 ISO
    base-excision repair GO:0006284 ISS
    base-excision repair, AP site formation GO:0006285 IBA
    base-excision repair, AP site formation GO:0006285 IEA
    negative regulation of protein binding GO:0032091 IDA
    negative regulation of chromatin binding GO:0035562 IDA
    epigenetic regulation of gene expression GO:0040029 IMP
    regulation of embryonic development GO:0045995 IMP
Subcellular Localization
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    nucleus GO:0005634 ISO
    nucleoplasm GO:0005654 ISO
    plasma membrane GO:0005886 IEA
    plasma membrane GO:0005886 ISO
    PML body GO:0016605 IDA
 Experiment description of studies that identified Tdg in sEVs
1
Experiment ID 15
MISEV standards
EM
Biophysical techniques
CD63
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 17486113    
Organism Mus musculus
Homo sapiens
Experiment description Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Authors "Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO"
Journal name NCB
Publication year 2007
Sample Mast cells
Sample name MC9
Bone marrow-derived mast cells
HMC-1
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.11-1.21 g/mL
Molecules identified in the study Protein
mRNA
miRNA
Methods used in the study Mass spectrometry [MALDI TOF]
Western blotting
Microarray
miRCURY LNA Array
 Protein-protein interactions for Tdg
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Lef1 16842
Two-hybrid Mus musculus
Reconstituted Complex Mus musculus
Affinity Capture-Western Mus musculus
2 DNMT3A 1788
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
View the network image/svg+xml



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