Gene description for Lyn
Gene name LYN proto-oncogene, Src family tyrosine kinase
Gene symbol Lyn
Other names/aliases p53Lyn
p56Lyn
Species Rattus norvegicus
 Database cross references - Lyn
ExoCarta ExoCarta_81515
Vesiclepedia VP_81515
Entrez Gene 81515
UniProt Q07014  
 Lyn identified in sEVs derived from the following tissue/cell type
Reticulocytes 21828046    
Reticulocytes 21828046    
 Gene ontology annotations for Lyn
Molecular Function
    protein kinase activity GO:0004672 ISO
    protein tyrosine kinase activity GO:0004713 IDA
    protein tyrosine kinase activity GO:0004713 ISO
    non-membrane spanning protein tyrosine kinase activity GO:0004715 IBA
    non-membrane spanning protein tyrosine kinase activity GO:0004715 ISO
    signaling receptor binding GO:0005102 IBA
    signaling receptor binding GO:0005102 IPI
    platelet-derived growth factor receptor binding GO:0005161 IPI
    integrin binding GO:0005178 IDA
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    kinase activity GO:0016301 TAS
    SH3 domain binding GO:0017124 ISO
    enzyme binding GO:0019899 IPI
    enzyme binding GO:0019899 ISO
    ubiquitin protein ligase binding GO:0031625 IPI
    histone H3Y41 kinase activity GO:0035401 IEA
    gamma-tubulin binding GO:0043015 IDA
    glycosphingolipid binding GO:0043208 IPI
    transmembrane transporter binding GO:0044325 ISO
    protein-containing complex binding GO:0044877 IDA
    protein-containing complex binding GO:0044877 IPI
    protein-containing complex binding GO:0044877 ISO
    ephrin receptor binding GO:0046875 ISO
    phosphoprotein binding GO:0051219 IPI
    scaffold protein binding GO:0097110 ISO
    phosphorylation-dependent protein binding GO:0140031 ISO
    histone H2AXY142 kinase activity GO:0140801 IEA
    phosphatidylinositol 3-kinase activator activity GO:0141038 ISO
Biological Process
    DNA damage checkpoint signaling GO:0000077 ISO
    cell morphogenesis GO:0000902 ISO
    B cell homeostasis GO:0001782 ISO
    B cell homeostasis GO:0001782 ISS
    regulation of cytokine production GO:0001817 ISO
    regulation of cytokine production GO:0001817 ISS
    negative regulation of protein phosphorylation GO:0001933 ISO
    negative regulation of protein phosphorylation GO:0001933 ISS
    positive regulation of protein phosphorylation GO:0001934 ISO
    hematopoietic progenitor cell differentiation GO:0002244 ISO
    adaptive immune response GO:0002250 IEA
    Fc receptor mediated stimulatory signaling pathway GO:0002431 IBA
    Fc receptor mediated stimulatory signaling pathway GO:0002431 ISO
    Fc receptor mediated stimulatory signaling pathway GO:0002431 ISS
    tolerance induction to self antigen GO:0002513 IBA
    tolerance induction to self antigen GO:0002513 ISO
    tolerance induction to self antigen GO:0002513 ISS
    histamine secretion by mast cell GO:0002553 IMP
    platelet degranulation GO:0002576 ISO
    platelet degranulation GO:0002576 ISS
    negative regulation of myeloid leukocyte differentiation GO:0002762 ISO
    immune response-regulating cell surface receptor signaling pathway GO:0002768 ISO
    immune response-regulating cell surface receptor signaling pathway GO:0002768 ISS
    Fc receptor mediated inhibitory signaling pathway GO:0002774 ISO
    Fc receptor mediated inhibitory signaling pathway GO:0002774 ISS
    regulation of B cell apoptotic process GO:0002902 ISO
    chromatin remodeling GO:0006338 IEA
    protein phosphorylation GO:0006468 ISO
    autophagy GO:0006914 ISO
    DNA damage response GO:0006974 IBA
    DNA damage response GO:0006974 ISO
    response to sterol depletion GO:0006991 IEP
    cell surface receptor protein tyrosine kinase signaling pathway GO:0007169 IBA
    cell surface receptor protein tyrosine kinase signaling pathway GO:0007169 ISO
    positive regulation of cell population proliferation GO:0008284 ISO
    positive regulation of cell population proliferation GO:0008284 ISS
    negative regulation of cell population proliferation GO:0008285 ISO
    negative regulation of cell population proliferation GO:0008285 ISS
    response to xenobiotic stimulus GO:0009410 IEP
    response to toxic substance GO:0009636 IEP
    response to hormone GO:0009725 ISO
    response to hormone GO:0009725 ISS
    response to carbohydrate GO:0009743 IEP
    positive regulation of neuron projection development GO:0010976 ISO
    oligodendrocyte development GO:0014003 IEP
    response to organic cyclic compound GO:0014070 IEP
    fatty acid transport GO:0015908 ISO
    peptidyl-tyrosine phosphorylation GO:0018108 ISO
    peptidyl-tyrosine phosphorylation GO:0018108 ISO
    hemopoiesis GO:0030097 ISO
    erythrocyte differentiation GO:0030218 ISO
    erythrocyte differentiation GO:0030218 ISS
    eosinophil differentiation GO:0030222 ISO
    positive regulation of cell migration GO:0030335 ISO
    negative regulation of B cell proliferation GO:0030889 ISO
    neuron projection development GO:0031175 IBA
    neuron projection development GO:0031175 ISO
    lipopolysaccharide-mediated signaling pathway GO:0031663 ISO
    lipopolysaccharide-mediated signaling pathway GO:0031663 ISS
    response to insulin GO:0032868 IEP
    regulation of mast cell activation GO:0033003 ISO
    regulation of mast cell activation GO:0033003 ISS
    regulation of cell adhesion mediated by integrin GO:0033628 ISO
    negative regulation of toll-like receptor 2 signaling pathway GO:0034136 ISO
    negative regulation of toll-like receptor 2 signaling pathway GO:0034136 ISS
    toll-like receptor 4 signaling pathway GO:0034142 ISO
    negative regulation of toll-like receptor 4 signaling pathway GO:0034144 ISO
    negative regulation of toll-like receptor 4 signaling pathway GO:0034144 ISS
    cellular response to heat GO:0034605 IEP
    intracellular signal transduction GO:0035556 ISO
    interleukin-5-mediated signaling pathway GO:0038043 ISO
    C-X-C chemokine receptor CXCR4 signaling pathway GO:0038159 ISO
    positive regulation of phosphorylation GO:0042327 IMP
    response to amino acid GO:0043200 IEP
    regulation of mast cell degranulation GO:0043304 ISO
    regulation of mast cell degranulation GO:0043304 ISS
    negative regulation of MAP kinase activity GO:0043407 ISO
    negative regulation of MAP kinase activity GO:0043407 ISS
    positive regulation of MAPK cascade GO:0043410 ISO
    response to peptide hormone GO:0043434 IEP
    regulation of erythrocyte differentiation GO:0045646 ISO
    regulation of erythrocyte differentiation GO:0045646 ISS
    protein autophosphorylation GO:0046777 ISO
    protein autophosphorylation GO:0046777 ISO
    response to axon injury GO:0048678 IEP
    regulation of inflammatory response GO:0050727 ISO
    B cell receptor signaling pathway GO:0050853 ISO
    regulation of B cell receptor signaling pathway GO:0050855 IBA
    regulation of B cell receptor signaling pathway GO:0050855 ISO
    regulation of B cell receptor signaling pathway GO:0050855 ISS
    regulation of release of sequestered calcium ion into cytosol GO:0051279 IMP
    regulation of release of sequestered calcium ion into cytosol GO:0051279 ISO
    positive regulation of glial cell proliferation GO:0060252 IDA
    positive regulation of Fc receptor mediated stimulatory signaling pathway GO:0060369 IMP
    regulation of ERK1 and ERK2 cascade GO:0070372 ISO
    regulation of ERK1 and ERK2 cascade GO:0070372 ISS
    negative regulation of ERK1 and ERK2 cascade GO:0070373 ISO
    negative regulation of ERK1 and ERK2 cascade GO:0070373 ISS
    positive regulation of oligodendrocyte progenitor proliferation GO:0070447 IMP
    negative regulation of mast cell proliferation GO:0070667 ISO
    negative regulation of mast cell proliferation GO:0070667 ISS
    positive regulation of mast cell proliferation GO:0070668 ISO
    cellular response to retinoic acid GO:0071300 ISO
    regulation of monocyte chemotaxis GO:0090025 ISO
    regulation of platelet aggregation GO:0090330 ISO
    regulation of platelet aggregation GO:0090330 ISS
    dendritic cell differentiation GO:0097028 IBA
    dendritic cell differentiation GO:0097028 ISO
    dendritic cell differentiation GO:0097028 ISS
    neuroinflammatory response GO:0150076 ISO
    negative regulation of intracellular signal transduction GO:1902532 ISO
    negative regulation of intracellular signal transduction GO:1902532 ISS
    positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process GO:1902961 ISO
    positive regulation of dendritic cell apoptotic process GO:2000670 ISO
    positive regulation of dendritic cell apoptotic process GO:2000670 ISS
Subcellular Localization
    nucleus GO:0005634 ISO
    nucleus GO:0005634 ISS
    cytoplasm GO:0005737 ISO
    cytoplasm GO:0005737 ISS
    Golgi apparatus GO:0005794 ISO
    plasma membrane GO:0005886 IBA
    plasma membrane GO:0005886 ISO
    plasma membrane GO:0005886 ISO
    adherens junction GO:0005912 IDA
    cytoplasmic side of plasma membrane GO:0009898 ISO
    mitochondrial crista GO:0030061 IDA
    mitochondrial membrane GO:0031966 IDA
    protein-containing complex GO:0032991 ISO
    integrin alpha2-beta1 complex GO:0034666 IDA
    intracellular membrane-bounded organelle GO:0043231 ISO
    membrane raft GO:0045121 ISO
    perinuclear region of cytoplasm GO:0048471 IDA
    perinuclear region of cytoplasm GO:0048471 ISO
    glutamatergic synapse GO:0098978 IDA
    postsynaptic specialization, intracellular component GO:0099091 IDA
 Experiment description of studies that identified Lyn in sEVs
1
Experiment ID 96
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
2
Experiment ID 97
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors "Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E."
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
 Protein-protein interactions for Lyn
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Lyn 81515
Biochemical Activity Rattus norvegicus
Biochemical Activity Rattus norvegicus
2 SNCA 6622
Biochemical Activity Homo sapiens
3 Cbl  
Affinity Capture-Western Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
Reconstituted Complex Rattus norvegicus
4 ENO1 2023
Biochemical Activity Homo sapiens
5 Ubc  
Affinity Capture-Western Rattus norvegicus
Two-hybrid Rattus norvegicus
Reconstituted Complex Rattus norvegicus
View the network image/svg+xml
 Pathways in which Lyn is involved
PathwayEvidenceSource
Adaptive Immune System IEA Reactome
Axon guidance IEA Reactome
C-type lectin receptors (CLRs) IEA Reactome
CD209 (DC-SIGN) signaling IEA Reactome
CD22 mediated BCR regulation IEA Reactome
CD28 co-stimulation IEA Reactome
Cell Cycle IEA Reactome
Cell Cycle, Mitotic IEA Reactome
Cell surface interactions at the vascular wall IEA Reactome
Costimulation by the CD28 family IEA Reactome
CTLA4 inhibitory signaling IEA Reactome
Cyclin D associated events in G1 IEA Reactome
Cytokine Signaling in Immune system IEA Reactome
Dectin-2 family IEA Reactome
Developmental Biology IEA Reactome
EPH-ephrin mediated repulsion of cells IEA Reactome
EPH-Ephrin signaling IEA Reactome
EPHA-mediated growth cone collapse IEA Reactome
EPHB-mediated forward signaling IEA Reactome
Erythropoietin activates Phosphoinositide-3-kinase (PI3K) IEA Reactome
Erythropoietin activates RAS IEA Reactome
Fc epsilon receptor (FCERI) signaling IEA Reactome
FCERI mediated Ca+2 mobilization IEA Reactome
FCERI mediated MAPK activation IEA Reactome
FCERI mediated NF-kB activation IEA Reactome
Fcgamma receptor (FCGR) dependent phagocytosis IEA Reactome
FCGR activation IEA Reactome
G1 Phase IEA Reactome
GPVI-mediated activation cascade IEA Reactome
Growth hormone receptor signaling IEA Reactome
Hemostasis IEA Reactome
Immune System IEA Reactome
Inactivation of CSF3 (G-CSF) signaling IEA Reactome
Innate Immune System IEA Reactome
Interleukin-3, Interleukin-5 and GM-CSF signaling IEA Reactome
Mitotic G1 phase and G1/S transition IEA Reactome
Nervous system development IEA Reactome
PECAM1 interactions IEA Reactome
Platelet activation, signaling and aggregation IEA Reactome
Platelet Adhesion to exposed collagen IEA Reactome
Regulation of KIT signaling IEA Reactome
Regulation of signaling by CBL IEA Reactome
Role of LAT2/NTAL/LAB on calcium mobilization IEA Reactome
Signal Transduction IEA Reactome
Signaling by CSF3 (G-CSF) IEA Reactome
Signaling by Erythropoietin IEA Reactome
Signaling by Interleukins IEA Reactome
Signaling by Receptor Tyrosine Kinases IEA Reactome
Signaling by SCF-KIT IEA Reactome
Signaling by the B Cell Receptor (BCR) IEA Reactome





Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here