Gene description for HIPK2
Gene name homeodomain interacting protein kinase 2
Gene symbol HIPK2
Other names/aliases PRO0593
Species Homo sapiens
 Database cross references - HIPK2
ExoCarta ExoCarta_28996
Vesiclepedia VP_28996
Entrez Gene 28996
HGNC 14402
MIM 606868
UniProt Q9H2X6  
 HIPK2 identified in sEVs derived from the following tissue/cell type
Endothelial cells 26027894    
 Gene ontology annotations for HIPK2
Molecular Function
    transcription coactivator activity GO:0003713 IBA
    transcription coactivator activity GO:0003713 ISS
    transcription corepressor activity GO:0003714 IBA
    transcription corepressor activity GO:0003714 IDA
    protein kinase activity GO:0004672 IDA
    protein serine/threonine kinase activity GO:0004674 IBA
    protein serine/threonine kinase activity GO:0004674 IDA
    protein serine/threonine kinase activity GO:0004674 ISS
    protein serine/threonine kinase activity GO:0004674 TAS
    3-phosphoinositide-dependent protein kinase activity GO:0004676 IEA
    DNA-dependent protein kinase activity GO:0004677 IEA
    AMP-activated protein kinase activity GO:0004679 IEA
    eukaryotic translation initiation factor 2alpha kinase activity GO:0004694 IEA
    ribosomal protein S6 kinase activity GO:0004711 IEA
    protein tyrosine kinase activity GO:0004713 IBA
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    histone H3S10 kinase activity GO:0035175 IEA
    histone H3T11 kinase activity GO:0035402 IEA
    histone H3T6 kinase activity GO:0035403 IEA
    histone H2AXS139 kinase activity GO:0035979 IEA
    histone H3S28 kinase activity GO:0044022 IEA
    histone H4S1 kinase activity GO:0044023 IEA
    histone H2AS1 kinase activity GO:0044024 IEA
    histone H2BS14 kinase activity GO:0044025 IEA
    SMAD binding GO:0046332 IBA
    SMAD binding GO:0046332 IPI
    virion binding GO:0046790 IPI
    RNA polymerase II-specific DNA-binding transcription factor binding GO:0061629 IPI
    RNA polymerase II-specific DNA-binding transcription factor binding GO:0061629 ISS
    histone H3T3 kinase activity GO:0072354 IEA
    histone H2AS121 kinase activity GO:0072371 IEA
    Rho-dependent protein serine/threonine kinase activity GO:0072518 IEA
    protein serine kinase activity GO:0106310 IEA
    histone H2BS36 kinase activity GO:0140823 IEA
    histone H3S57 kinase activity GO:0140855 IEA
    histone H3T45 kinase activity GO:0140857 IEA
    histone H2AT120 kinase activity GO:1990244 IEA
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IEA
    eye development GO:0001654 ISS
    respiratory system process GO:0003016 IEA
    protein phosphorylation GO:0006468 IDA
    transforming growth factor beta receptor signaling pathway GO:0007179 IEA
    smoothened signaling pathway GO:0007224 IBA
    adult walking behavior GO:0007628 IEA
    cell population proliferation GO:0008283 IEA
    positive regulation of cell population proliferation GO:0008284 IEA
    anterior/posterior pattern specification GO:0009952 IEA
    gene expression GO:0010467 IEA
    retina layer formation GO:0010842 IEA
    peptidyl-serine phosphorylation GO:0018105 IDA
    peptidyl-serine phosphorylation GO:0018105 ISS
    peptidyl-threonine phosphorylation GO:0018107 ISS
    neuron differentiation GO:0030182 IEA
    erythrocyte differentiation GO:0030218 ISS
    DNA damage response, signal transduction by p53 class mediator GO:0030330 IDA
    positive regulation of transforming growth factor beta receptor signaling pathway GO:0030511 IMP
    negative regulation of BMP signaling pathway GO:0030514 IMP
    PML body organization GO:0030578 TAS
    thyroid gland development GO:0030878 IEA
    positive regulation of protein binding GO:0032092 ISS
    epigenetic regulation of gene expression GO:0040029 TAS
    intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator GO:0042771 IBA
    intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator GO:0042771 TAS
    negative regulation of neuron apoptotic process GO:0043524 IEA
    positive regulation of angiogenesis GO:0045766 IDA
    positive regulation of transcription by RNA polymerase II GO:0045944 IBA
    positive regulation of transcription by RNA polymerase II GO:0045944 IMP
    positive regulation of transcription by RNA polymerase II GO:0045944 ISS
    positive regulation of JNK cascade GO:0046330 IMP
    embryonic camera-type eye morphogenesis GO:0048596 IEA
    voluntary musculoskeletal movement GO:0050882 IEA
    positive regulation of DNA-binding transcription factor activity GO:0051091 ISS
    neuron apoptotic process GO:0051402 IEA
    regulation of cell cycle GO:0051726 TAS
    embryonic retina morphogenesis in camera-type eye GO:0060059 IEA
    lens induction in camera-type eye GO:0060235 IEA
    SMAD protein signal transduction GO:0060395 IDA
    lung morphogenesis GO:0060425 IEA
    iris morphogenesis GO:0061072 IEA
    cellular response to hypoxia GO:0071456 TAS
    intrinsic apoptotic signaling pathway GO:0097193 NAS
    regulation of signal transduction by p53 class mediator GO:1901796 TAS
    negative regulation of ubiquitin-dependent protein catabolic process GO:2000059 IMP
Subcellular Localization
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    cytoplasm GO:0005737 IBA
    cytoplasm GO:0005737 IDA
    cytoplasm GO:0005737 ISS
    cytoplasmic stress granule GO:0010494 IDA
    nuclear body GO:0016604 IDA
    nuclear body GO:0016604 TAS
    PML body GO:0016605 IBA
    PML body GO:0016605 IDA
    RNA polymerase II transcription regulator complex GO:0090575 ISS
 Experiment description of studies that identified HIPK2 in sEVs
1
Experiment ID 226
MISEV standards
EM
Biophysical techniques
GAPDH|CD9|FLOT1
Enriched markers
LMNA|H2AFX|ATP5A1|TOMM20
Negative markers
Particle analysis
Identified molecule mRNA
Identification method Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID 26027894    
Organism Homo sapiens
Experiment description "Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting"
Authors "Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar"
Journal name Journal of Extracellular Vesicles
Publication year 2015
Sample Endothelial cells
Sample name HMEC-1
Isolation/purification methods Differential ultracentrifugation
Sucrose density gradient
Flotation density 1.10 g/mL
Molecules identified in the study miRNA
Protein
snoRNA
lncRNA
yRNA
snRNA
mRNA
ncRNA
mtRNA
vtRNA
scaRNA
lincRNA
Methods used in the study Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
Western blotting
 Protein-protein interactions for HIPK2
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 SIAH1  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
2 ZBTB4 57659
Two-hybrid Homo sapiens
Co-localization Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
3 HIST2H2BE 8349
Co-localization Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
4 HNRNPH1 3187
Affinity Capture-RNA Homo sapiens
5 MECP2 4204
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
6 CUL1 8454
Affinity Capture-Western Homo sapiens
7 PAX6  
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
8 XAF1  
Phenotypic Suppression Homo sapiens
Affinity Capture-Western Homo sapiens
9 SPOP  
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Co-localization Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
10 PARP1 142
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
11 STUB1 10273
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
12 AATF  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
13 SIAH1P1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
14 SIAH2 6478
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
15 TP53 7157
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
16 Pml  
Affinity Capture-Western Mus musculus
17 DYRK1B  
Affinity Capture-Western Homo sapiens
18 MKNK1  
Two-hybrid Homo sapiens
19 SKI 6497
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
20 RUNX1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
21 TP53INP1  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
22 CXCL1 2919
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
23 FHL3 2275
Affinity Capture-MS Homo sapiens
24 AXIN1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
25 SENP2 59343
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
26 ACTBL2 345651
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
27 TRADD 8717
Affinity Capture-Western Homo sapiens
28 SENP1  
Biochemical Activity Homo sapiens
29 ABL1 25
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
30 MYBL1  
Reconstituted Complex Homo sapiens
31 CREBBP  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
32 CBX4  
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
33 HSPA1A 3303
Affinity Capture-Western Homo sapiens
34 NKX2-1  
Two-hybrid Homo sapiens
35 TP73  
Two-hybrid Homo sapiens
36 BTRC 8945
Affinity Capture-Western Homo sapiens
37 MAP3K1 4214
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
38 SMAD1 4086
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
39 LZTS2 84445
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
40 UBE2I 7329
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Two-hybrid Homo sapiens
41 RGMA  
Affinity Capture-MS Homo sapiens
42 MYBL2 4605
Affinity Capture-Western Homo sapiens
43 RANBP9 10048
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
44 CHMP4B 128866
Two-hybrid Homo sapiens
45 ERG  
Proximity Label-MS Homo sapiens
46 DYRK1A 1859
Affinity Capture-Western Homo sapiens
47 WSB1 26118
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
48 DCAF7 10238
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Co-localization Homo sapiens
Affinity Capture-Western Homo sapiens
49 SMAD3 4088
Reconstituted Complex Homo sapiens
50 TP63  
Two-hybrid Homo sapiens
51 NLK  
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
52 SUMO2 6613
Reconstituted Complex Homo sapiens
53 FBXW7  
Affinity Capture-Western Homo sapiens
54 SMAD2 4087
Reconstituted Complex Homo sapiens
55 HIPK2 28996
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
56 PML 5371
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Co-localization Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
57 SUMO3 6612
Reconstituted Complex Homo sapiens
58 MAP3K7  
Biochemical Activity Homo sapiens
59 Ube2i  
Reconstituted Complex Mus musculus
Two-hybrid Mus musculus
60 MYB  
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
61 FBXO3  
Affinity Capture-Western Homo sapiens
62 FHL2 2274
Affinity Capture-MS Homo sapiens
63 MDM2  
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
64 DAXX  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
65 EP300 2033
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
66 DAZAP2  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
67 SUMO1 7341
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Co-localization Homo sapiens
68 SP100 6672
Affinity Capture-Western Homo sapiens
View the network image/svg+xml



Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here