Gene description for Shmt1
Gene name serine hydroxymethyltransferase 1 (soluble)
Gene symbol Shmt1
Other names/aliases AI324848
AI385541
C81125
Shmt
mshmt
mshmt1
mshmt2
Species Mus musculus
 Database cross references - Shmt1
ExoCarta ExoCarta_20425
Vesiclepedia VP_20425
Entrez Gene 20425
UniProt P50431  
 Shmt1 identified in sEVs derived from the following tissue/cell type
Mast cells 17486113    
 Gene ontology annotations for Shmt1
Molecular Function
    mRNA regulatory element binding translation repressor activity GO:0000900 IEA
    mRNA regulatory element binding translation repressor activity GO:0000900 ISO
    glycine hydroxymethyltransferase activity GO:0004372 IBA
    glycine hydroxymethyltransferase activity GO:0004372 IGI
    glycine hydroxymethyltransferase activity GO:0004372 IMP
    glycine hydroxymethyltransferase activity GO:0004372 ISO
    glycine hydroxymethyltransferase activity GO:0004372 ISS
    L-allo-threonine aldolase activity GO:0008732 ISO
    amino acid binding GO:0016597 ISO
    pyridoxal phosphate binding GO:0030170 IBA
    pyridoxal phosphate binding GO:0030170 ISO
    pyridoxal phosphate binding GO:0030170 ISS
    small molecule binding GO:0036094 ISO
    identical protein binding GO:0042802 ISO
    protein homodimerization activity GO:0042803 IEA
    protein homodimerization activity GO:0042803 ISO
    mRNA 5'-UTR binding GO:0048027 IEA
    mRNA 5'-UTR binding GO:0048027 ISO
    serine binding GO:0070905 IEA
    serine binding GO:0070905 ISO
Biological Process
    dTMP biosynthetic process GO:0006231 IMP
    glycine metabolic process GO:0006544 ISO
    glycine metabolic process GO:0006544 ISS
    glycine biosynthetic process GO:0006545 ISO
    L-serine metabolic process GO:0006563 ISO
    L-serine metabolic process GO:0006563 ISS
    L-serine catabolic process GO:0006565 IEA
    L-serine catabolic process GO:0006565 ISO
    one-carbon metabolic process GO:0006730 IC
    purine nucleobase biosynthetic process GO:0009113 IEA
    purine nucleobase biosynthetic process GO:0009113 ISO
    negative regulation of translation GO:0017148 IEA
    negative regulation of translation GO:0017148 ISO
    glycine biosynthetic process from serine GO:0019264 IBA
    glycine biosynthetic process from serine GO:0019264 IEA
    glycine biosynthetic process from serine GO:0019264 ISO
    tetrahydrofolate interconversion GO:0035999 IEA
    tetrahydrofolate interconversion GO:0035999 IMP
    tetrahydrofolate interconversion GO:0035999 ISO
    tetrahydrofolate metabolic process GO:0046653 IBA
    tetrahydrofolate metabolic process GO:0046653 ISO
    tetrahydrofolate metabolic process GO:0046653 ISS
    folic acid metabolic process GO:0046655 IEA
    folic acid metabolic process GO:0046655 ISO
    protein homotetramerization GO:0051289 ISO
    protein homotetramerization GO:0051289 ISS
    cellular response to tetrahydrofolate GO:1904482 IEA
    cellular response to tetrahydrofolate GO:1904482 ISO
    cellular response to leukemia inhibitory factor GO:1990830 IEP
Subcellular Localization
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    nucleus GO:0005634 IGI
    nucleus GO:0005634 IMP
    nucleoplasm GO:0005654 IEA
    nucleoplasm GO:0005654 ISO
    cytoplasm GO:0005737 IBA
    mitochondrion GO:0005739 HDA
    mitochondrion GO:0005739 IBA
    cytosol GO:0005829 ISO
    cytosol GO:0005829 ISS
 Experiment description of studies that identified Shmt1 in sEVs
1
Experiment ID 15
MISEV standards
EM
Biophysical techniques
CD63
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 17486113    
Organism Mus musculus
Homo sapiens
Experiment description Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Authors "Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO"
Journal name NCB
Publication year 2007
Sample Mast cells
Sample name MC9
Bone marrow-derived mast cells
HMC-1
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.11-1.21 g/mL
Molecules identified in the study Protein
mRNA
miRNA
Methods used in the study Mass spectrometry [MALDI TOF]
Western blotting
Microarray
miRCURY LNA Array
 Protein-protein interactions for Shmt1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Snx2 67804
Co-fractionation Mus musculus
2 Snx6 72183
Co-fractionation Mus musculus
3 Vps29 56433
Co-fractionation Mus musculus
View the network image/svg+xml



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