Gene description for UBE2B
Gene name ubiquitin-conjugating enzyme E2B
Gene symbol UBE2B
Other names/aliases E2-17kDa
HHR6B
HR6B
RAD6B
UBC2
Species Homo sapiens
 Database cross references - UBE2B
ExoCarta ExoCarta_7320
Vesiclepedia VP_7320
Entrez Gene 7320
HGNC 12473
MIM 179095
UniProt P63146  
 UBE2B identified in sEVs derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
 Gene ontology annotations for UBE2B
Molecular Function
    ubiquitin-protein transferase activity GO:0004842 IDA
    ubiquitin-protein transferase activity GO:0004842 IMP
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    ubiquitin protein ligase binding GO:0031625 IPI
    ubiquitin conjugating enzyme activity GO:0061631 IBA
    ubiquitin conjugating enzyme activity GO:0061631 IDA
Biological Process
    protein polyubiquitination GO:0000209 IBA
    in utero embryonic development GO:0001701 IEA
    DNA repair GO:0006281 IBA
    DNA repair GO:0006281 IGI
    postreplication repair GO:0006301 IDA
    postreplication repair GO:0006301 NAS
    chromatin organization GO:0006325 IEA
    ubiquitin-dependent protein catabolic process GO:0006511 IDA
    ubiquitin-dependent protein catabolic process GO:0006511 NAS
    apoptotic process GO:0006915 IEA
    DNA damage response GO:0006974 IDA
    spermatogenesis GO:0007283 TAS
    sperm axoneme assembly GO:0007288 IEA
    response to xenobiotic stimulus GO:0009410 IDA
    response to UV GO:0009411 IGI
    positive regulation of reciprocal meiotic recombination GO:0010845 IEA
    protein ubiquitination GO:0016567 IDA
    ectopic germ cell programmed cell death GO:0035234 IEA
    negative regulation of apoptotic process GO:0043066 IEA
    proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161 IBA
    proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161 IDA
    meiotic telomere clustering GO:0045141 IEA
    protein stabilization GO:0050821 IMP
    chiasma assembly GO:0051026 IEA
    negative regulation of developmental process GO:0051093 IEA
    protein autoubiquitination GO:0051865 IDA
    synaptonemal complex organization GO:0070193 IEA
    protein K63-linked ubiquitination GO:0070534 IDA
    protein K48-linked ubiquitination GO:0070936 IDA
    protein K11-linked ubiquitination GO:0070979 IDA
    positive regulation of canonical Wnt signaling pathway GO:0090263 ISS
    negative regulation of post-translational protein modification GO:1901874 IEA
    negative regulation of reproductive process GO:2000242 IEA
Subcellular Localization
    chromatin GO:0000785 ISS
    XY body GO:0001741 IEA
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 TAS
    replication fork GO:0005657 IDA
    cytoplasm GO:0005737 IDA
    plasma membrane GO:0005886 IEA
    HULC complex GO:0033503 IBA
    HULC complex GO:0033503 IDA
 Experiment description of studies that identified UBE2B in sEVs
1
Experiment ID 235
MISEV standards
EM
Biophysical techniques
TSG101|Alix|HSC70|GAPDH
Enriched markers
HSP90B1
Negative markers
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
 Protein-protein interactions for UBE2B
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 UBR2 23304
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
2 IGBP1 3476
Co-fractionation Homo sapiens
3 PSMB2 5690
Co-fractionation Homo sapiens
4 PAICS 10606
Co-fractionation Homo sapiens
5 BIRC2  
Two-hybrid Homo sapiens
6 SEC23A 10484
Co-fractionation Homo sapiens
7 RNF40 9810
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
8 SEC24A 10802
Co-fractionation Homo sapiens
9 CRMP1 1400
Two-hybrid Homo sapiens
10 TTC1 7265
Co-fractionation Homo sapiens
11 UBE2A  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
12 ERCC4  
Co-fractionation Homo sapiens
13 NIPSNAP3A  
Affinity Capture-MS Homo sapiens
14 ANKRD32  
Affinity Capture-MS Homo sapiens
15 ZRANB2 9406
Co-fractionation Homo sapiens
16 TP53 7157
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
17 AHCYL1 10768
Co-fractionation Homo sapiens
18 CDKN1B 1027
Biochemical Activity Homo sapiens
19 TRIM45  
Reconstituted Complex Homo sapiens
20 TYMS 7298
Co-fractionation Homo sapiens
21 ACOT9 23597
Affinity Capture-MS Homo sapiens
22 SRXN1 140809
Co-fractionation Homo sapiens
23 UNK  
Affinity Capture-RNA Homo sapiens
Co-fractionation Homo sapiens
24 UBXN7 26043
Co-fractionation Homo sapiens
25 SULT1A1 6817
Co-fractionation Homo sapiens
26 UBR4 23352
Affinity Capture-MS Homo sapiens
27 UBE2L3 7332
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
28 CTNNB1 1499
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
29 SRSF1 6426
Affinity Capture-RNA Homo sapiens
30 KCMF1 56888
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
31 UBA1 7317
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
32 UBA52 7311
Co-fractionation Homo sapiens
33 ABHD10 55347
Affinity Capture-MS Homo sapiens
34 PRDX5 25824
Co-fractionation Homo sapiens
35 UBE2C 11065
Co-fractionation Homo sapiens
36 RC3H2  
Reconstituted Complex Homo sapiens
37 USP9X 8239
Co-fractionation Homo sapiens
38 UBC 7316
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
39 HIST2H2AC 8338
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
40 WAC  
Affinity Capture-MS Homo sapiens
41 RNF167 26001
Reconstituted Complex Homo sapiens
42 RNF20 56254
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
43 SRSF2 6427
Co-fractionation Homo sapiens
44 UBE2V1 7335
Co-fractionation Homo sapiens
45 ZFYVE19 84936
Co-fractionation Homo sapiens
46 NIPSNAP1 8508
Affinity Capture-MS Homo sapiens
47 SSBP1 6742
Affinity Capture-MS Homo sapiens
48 NBN 4683
Affinity Capture-Western Homo sapiens
49 ATP6V1F 9296
Co-fractionation Homo sapiens
50 PCNA 5111
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
51 HERPUD2  
Two-hybrid Homo sapiens
52 POLH  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
53 UBR3  
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
54 ZYX 7791
Co-fractionation Homo sapiens
55 UBR5 51366
Reconstituted Complex Homo sapiens
56 UBA2 10054
Co-fractionation Homo sapiens
57 UBE2B 7320
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
58 UBR1 197131
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
59 SARS2 54938
Affinity Capture-MS Homo sapiens
60 CBX5 23468
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
61 SSSCA1 10534
Co-fractionation Homo sapiens
62 RAD18  
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Co-crystal Structure Homo sapiens
Affinity Capture-Western Homo sapiens
Co-crystal Structure Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Co-purification Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
63 UBQLN4 56893
Co-fractionation Homo sapiens
64 DSTN 11034
Co-fractionation Homo sapiens
65 UNC119 9094
Two-hybrid Homo sapiens
66 ATP6V1B1 525
Co-fractionation Homo sapiens
67 RC3H1 149041
Reconstituted Complex Homo sapiens
68 TTLL12 23170
Co-fractionation Homo sapiens
69 MED31  
Two-hybrid Homo sapiens
70 UBQLN1 29979
Co-fractionation Homo sapiens
71 HNRNPH1 3187
Affinity Capture-RNA Homo sapiens
72 ZMYM2  
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
73 UBE2V2 7336
Co-fractionation Homo sapiens
74 MDM2  
Affinity Capture-Western Homo sapiens
75 SERPINH1 871
Co-fractionation Homo sapiens
76 SKP1 6500
Co-fractionation Homo sapiens
77 CPLX1 10815
Co-fractionation Homo sapiens
78 UBE2D1 7321
Co-fractionation Homo sapiens
79 COL20A1  
Affinity Capture-MS Homo sapiens
View the network image/svg+xml



Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here