Gene description for SLC6A4
Gene name solute carrier family 6 (neurotransmitter transporter), member 4
Gene symbol SLC6A4
Other names/aliases 5-HTT
5-HTTLPR
5HTT
HTT
OCD1
SERT
SERT1
hSERT
Species Homo sapiens
 Database cross references - SLC6A4
ExoCarta ExoCarta_6532
Vesiclepedia VP_6532
Entrez Gene 6532
HGNC 11050
MIM 182138
UniProt P31645  
 SLC6A4 identified in sEVs derived from the following tissue/cell type
Platelets 25332113    
Platelets 25332113    
Platelets 25332113    
 Gene ontology annotations for SLC6A4
Molecular Function
    integrin binding GO:0005178 IDA
    monoatomic cation channel activity GO:0005261 ISS
    neurotransmitter transmembrane transporter activity GO:0005326 ISS
    serotonin:sodium:chloride symporter activity GO:0005335 IBA
    serotonin:sodium:chloride symporter activity GO:0005335 IDA
    serotonin:sodium:chloride symporter activity GO:0005335 IMP
    serotonin:sodium:chloride symporter activity GO:0005335 TAS
    protein binding GO:0005515 IPI
    monoamine transmembrane transporter activity GO:0008504 IDA
    monoamine transmembrane transporter activity GO:0008504 ISS
    antiporter activity GO:0015297 IDA
    syntaxin-1 binding GO:0017075 IEA
    cocaine binding GO:0019811 IEA
    sodium ion binding GO:0031402 IDA
    identical protein binding GO:0042802 ISS
    nitric-oxide synthase binding GO:0050998 IEA
    actin filament binding GO:0051015 ISS
    serotonin binding GO:0051378 IBA
    serotonin binding GO:0051378 IDA
Biological Process
    response to hypoxia GO:0001666 IEA
    neurotransmitter transport GO:0006836 ISS
    amino acid transport GO:0006865 IBA
    response to nutrient GO:0007584 IEA
    memory GO:0007613 IEA
    circadian rhythm GO:0007623 IEA
    response to xenobiotic stimulus GO:0009410 IEA
    response to toxic substance GO:0009636 IDA
    positive regulation of gene expression GO:0010628 IEA
    positive regulation of serotonin secretion GO:0014064 IEA
    monoamine transport GO:0015844 IDA
    negative regulation of cerebellar granule cell precursor proliferation GO:0021941 IEA
    negative regulation of synaptic transmission, dopaminergic GO:0032227 IEA
    response to estradiol GO:0032355 IEA
    sodium ion transmembrane transport GO:0035725 IBA
    vasoconstriction GO:0042310 IEA
    sperm ejaculation GO:0042713 IEA
    negative regulation of neuron differentiation GO:0045665 IEA
    positive regulation of cell cycle GO:0045787 IEA
    negative regulation of organ growth GO:0046621 IEA
    behavioral response to cocaine GO:0048148 IEA
    enteric nervous system development GO:0048484 IEA
    brain morphogenesis GO:0048854 IEA
    serotonin uptake GO:0051610 IBA
    serotonin uptake GO:0051610 IDA
    serotonin uptake GO:0051610 IMP
    serotonin uptake GO:0051610 ISS
    serotonin uptake GO:0051610 TAS
    membrane depolarization GO:0051899 ISS
    platelet aggregation GO:0070527 ISS
    cellular response to retinoic acid GO:0071300 IEA
    cellular response to cGMP GO:0071321 IEA
    regulation of thalamus size GO:0090067 IMP
    conditioned place preference GO:1990708 IEA
Subcellular Localization
    plasma membrane GO:0005886 IBA
    plasma membrane GO:0005886 IDA
    plasma membrane GO:0005886 TAS
    focal adhesion GO:0005925 ISS
    endosome membrane GO:0010008 IEA
    endomembrane system GO:0012505 IDA
    presynaptic membrane GO:0042734 IEA
    neuron projection GO:0043005 IBA
    membrane raft GO:0045121 IDA
    synapse GO:0045202 IBA
    synapse GO:0045202 ISS
    postsynaptic membrane GO:0045211 IEA
    serotonergic synapse GO:0099154 IEA
 Experiment description of studies that identified SLC6A4 in sEVs
1
Experiment ID 231
MISEV standards
Biophysical techniques
Alix|CD63|CD9
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25332113    
Organism Homo sapiens
Experiment description Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors "Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name Transfusion
Publication year 2015
Sample Platelets
Sample name PL-Exs - Rep 1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Optiprep density gradient
Flotation density 1.12-1.15 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 232
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25332113    
Organism Homo sapiens
Experiment description Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors "Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name Transfusion
Publication year 2015
Sample Platelets
Sample name PL-Exs - Rep 2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Optiprep density gradient
Flotation density 1.12-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
3
Experiment ID 233
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25332113    
Organism Homo sapiens
Experiment description Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
Authors "Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G."
Journal name Transfusion
Publication year 2015
Sample Platelets
Sample name PL-Exs - Rep 3
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Optiprep density gradient
Flotation density 1.12-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for SLC6A4
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 SNCA 6622
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
2 SNCG 6623
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
3 CALR 811
Reconstituted Complex Homo sapiens
4 STX1A 6804
Affinity Capture-Western Homo sapiens
5 CANX 821
Reconstituted Complex Homo sapiens
6 SCAMP2 10066
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
7 SYVN1 84447
Affinity Capture-Western Homo sapiens
8 DDX58 23586
Affinity Capture-RNA Homo sapiens
View the network image/svg+xml



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