Gene description for RNU11
Gene name RNA, U11 small nuclear
Gene symbol RNU11
Other names/aliases RNU11-1
U11
Species Homo sapiens
 Database cross references - RNU11
ExoCarta ExoCarta_26824
Entrez Gene 26824
HGNC 10108
 RNU11 identified in exosomes derived from the following tissue/cell type
Endothelial cells 26027894    
Plasma 23663360    
 Gene ontology annotations for RNU11
 Experiment description of studies that identified RNU11 in exosomes
1
Experiment ID 226
ISEV standards
EM
EV Biophysical techniques
GAPDH
EV Cytosolic markers
CD9|FLOT1
EV Membrane markers
LMNA|H2AFX|ATP5A1|TOMM20
EV Negative markers
EV Particle analysis
Identified molecule snRNA
Identification method Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID 26027894    
Organism Homo sapiens
Experiment description Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting
Authors Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar
Journal name Journal of Extracellular Vesicles
Publication year 2015
Sample Endothelial cells
Sample name HMEC-1
Isolation/purification methods Differential ultracentrifugation
Sucrose density gradient
Flotation density 1.10 g/mL
Molecules identified in the study miRNA
Protein
snoRNA
lncRNA
yRNA
snRNA
mRNA
ncRNA
mtRNA
vtRNA
scaRNA
lincRNA
Methods used in the study Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
Western blotting
2
Experiment ID 222
ISEV standards
EV Biophysical techniques
EV Cytosolic markers
EV Membrane markers
EV Negative markers
NTA
EV Particle analysis
Identified molecule snRNA
Identification method RT-PCR
PubMed ID 23663360    
Organism Homo sapiens
Experiment description Characterization of human plasma-derived exosomal RNAs by deep sequencing
Authors Huang X, Yuan T, Tschannen M, Sun Z, Jacob H, Du M, Liang M, Dittmar RL, Liu Y, Liang M, Kohli M, Thibodeau SN, Boardman L, Wang L
Journal name BMC Genomics
Publication year 2013
Sample Plasma
Sample name Plasma - Normal
Isolation/purification methods Exoquick
Flotation density -
Molecules identified in the study miRNA
tRNA
snRNA
snoRNA
rRNA
piRNA
lncRNA
Methods used in the study RT-PCR
 Protein-protein interactions for RNU11
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 DHX15 1665
Affinity Capture-MS Homo sapiens
2 SF3B2 10992
Affinity Capture-MS Homo sapiens
3 SNRPG 6637
Affinity Capture-MS Homo sapiens
4 TOE1 114034
Affinity Capture-MS Homo sapiens
5 YBX1 4904
Affinity Capture-MS Homo sapiens
6 SF3B4 10262
Affinity Capture-MS Homo sapiens
7 PRPF6 24148
Affinity Capture-MS Homo sapiens
8 U1SNRNPBP  
Affinity Capture-MS Homo sapiens
9 PRPF8 10594
Affinity Capture-MS Homo sapiens
10 PRKRIP1 79706
Affinity Capture-MS Homo sapiens
11 ZMAT5  
Affinity Capture-MS Homo sapiens
12 SNRPD2 6633
Affinity Capture-MS Homo sapiens
13 RNPC3  
Affinity Capture-MS Homo sapiens
14 EFTUD2 9343
Affinity Capture-MS Homo sapiens
15 SNRNP200 23020
Affinity Capture-MS Homo sapiens
16 C16orf33  
Affinity Capture-MS Homo sapiens
17 SNRPD1 6632
Affinity Capture-MS Homo sapiens
18 MADP-1  
Affinity Capture-MS Homo sapiens
19 SF3B1 23451
Affinity Capture-MS Homo sapiens
20 PHF5A 84844
Affinity Capture-MS Homo sapiens
21 SF3B3 23450
Affinity Capture-MS Homo sapiens
22 SNRNP48  
Affinity Capture-MS Homo sapiens
23 PDCD7  
Affinity Capture-MS Homo sapiens
24 SNRPD3 6634
Affinity Capture-MS Homo sapiens
25 U2AF1 7307
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which RNU11 is involved
No pathways found





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