Experiment description of studies that identified RNU11 in exosomes

1 Experiment ID 226 MISEV standards ✔ EM EV Biophysical techniques ✔ GAPDH|CD9|FLOT1 EV Enriched markers ✔ LMNA|H2AFX|ATP5A1|TOMM20 EV Negative markers ✘ EV Particle analysis Identified molecule snRNA Identification method Small RNA sequencing (Illumina HiSeq 2000 (Solexa) PubMed ID 26027894     Organism Homo sapiens Experiment description Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting Authors Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar Journal name Journal of Extracellular Vesicles Publication year 2015 Sample Endothelial cells Sample name HMEC-1 Isolation/purification methods Differential ultracentrifugation Sucrose density gradient Flotation density 1.10 g/mL Molecules identified in the study miRNA Protein snoRNA lncRNA yRNA snRNA mRNA ncRNA mtRNA vtRNA scaRNA lincRNA Methods used in the study Small RNA sequencing (Illumina HiSeq 2000 (Solexa) Western blotting

2 Experiment ID 222 MISEV standards ✘ EV Biophysical techniques ✘ EV Enriched markers ✘ EV Negative markers ✔ NTA EV Particle analysis Identified molecule snRNA Identification method RT-PCR PubMed ID 23663360     Organism Homo sapiens Experiment description Characterization of human plasma-derived exosomal RNAs by deep sequencing Authors Huang X, Yuan T, Tschannen M, Sun Z, Jacob H, Du M, Liang M, Dittmar RL, Liu Y, Liang M, Kohli M, Thibodeau SN, Boardman L, Wang L Journal name BMC Genomics Publication year 2013 Sample Plasma Sample name Plasma - Normal Isolation/purification methods Exoquick Flotation density - Molecules identified in the study miRNA tRNA snRNA snoRNA rRNA piRNA lncRNA Methods used in the study RT-PCR

Protein-protein interactions for RNU11

Protein Interactor ExoCarta ID Identification method PubMed Species 1 DHX15 1665 Affinity Capture-MS Homo sapiens 2 SF3B2 10992 Affinity Capture-MS Homo sapiens 3 SNRPG 6637 Affinity Capture-MS Homo sapiens 4 TOE1 114034 Affinity Capture-MS Homo sapiens 5 YBX1 4904 Affinity Capture-MS Homo sapiens 6 SF3B4 10262 Affinity Capture-MS Homo sapiens 7 PRPF6 24148 Affinity Capture-MS Homo sapiens 8 U1SNRNPBP   Affinity Capture-MS Homo sapiens 9 PRPF8 10594 Affinity Capture-MS Homo sapiens 10 PRKRIP1 79706 Affinity Capture-MS Homo sapiens 11 ZMAT5   Affinity Capture-MS Homo sapiens 12 SNRPD2 6633 Affinity Capture-MS Homo sapiens 13 RNPC3   Affinity Capture-MS Homo sapiens 14 EFTUD2 9343 Affinity Capture-MS Homo sapiens 15 SNRNP200 23020 Affinity Capture-MS Homo sapiens 16 C16orf33   Affinity Capture-MS Homo sapiens 17 SNRPD1 6632 Affinity Capture-MS Homo sapiens 18 MADP-1   Affinity Capture-MS Homo sapiens 19 SF3B1 23451 Affinity Capture-MS Homo sapiens 20 PHF5A 84844 Affinity Capture-MS Homo sapiens 21 SF3B3 23450 Affinity Capture-MS Homo sapiens 22 SNRNP48   Affinity Capture-MS Homo sapiens 23 PDCD7   Affinity Capture-MS Homo sapiens 24 SNRPD3 6634 Affinity Capture-MS Homo sapiens 25 U2AF1 7307 Affinity Capture-MS Homo sapiens View the network

Pathways in which RNU11 is involved

No pathways found