Gene description for SCN5A
Gene name sodium channel, voltage gated, type V alpha subunit
Gene symbol SCN5A
Other names/aliases CDCD2
CMD1E
CMPD2
HB1
HB2
HBBD
HH1
ICCD
IVF
LQT3
Nav1.5
PFHB1
SSS1
VF1
Species Homo sapiens
 Database cross references - SCN5A
ExoCarta ExoCarta_6331
Vesiclepedia VP_6331
Entrez Gene 6331
HGNC 10593
MIM 600163
UniProt Q14524  
 SCN5A identified in exosomes derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
 Gene ontology annotations for SCN5A
Molecular Function
    ubiquitin protein ligase binding GO:0031625 IPI
    ion channel binding GO:0044325 IPI
    ankyrin binding GO:0030506 IDA
    voltage-gated sodium channel activity involved in AV node cell action potential GO:0086060 IMP
    voltage-gated sodium channel activity involved in SA node cell action potential GO:0086063 IMP
    fibroblast growth factor binding GO:0017134 IPI
    protein kinase binding GO:0019901 IPI
    calmodulin binding GO:0005516 IPI
    scaffold protein binding GO:0097110 IPI
    enzyme binding GO:0019899 IPI
    voltage-gated sodium channel activity involved in bundle of His cell action potential GO:0086061 IMP
    voltage-gated sodium channel activity GO:0005248 IDA
    nitric-oxide synthase binding GO:0050998 IPI
    voltage-gated sodium channel activity involved in cardiac muscle cell action potential GO:0086006 IMP
    protein binding GO:0005515 IPI
    voltage-gated sodium channel activity involved in Purkinje myocyte action potential GO:0086062 IMP
Biological Process
    ventricular cardiac muscle cell action potential GO:0086005 IMP
    positive regulation of sodium ion transport GO:0010765 IDA
    positive regulation of epithelial cell proliferation GO:0050679 ISS
    regulation of atrial cardiac muscle cell membrane depolarization GO:0060371 IMP
    AV node cell to bundle of His cell communication GO:0086067 IMP
    regulation of cardiac muscle cell contraction GO:0086004 IMP
    sodium ion transmembrane transport GO:0035725 IMP
    regulation of atrial cardiac muscle cell membrane repolarization GO:0060372 IMP
    neuronal action potential GO:0019228 IBA
    cardiac ventricle development GO:0003231 ISS
    membrane depolarization during action potential GO:0086010 IDA
    brainstem development GO:0003360 ISS
    cerebellum development GO:0021549 ISS
    cardiac muscle contraction GO:0060048 IMP
    membrane depolarization during Purkinje myocyte cell action potential GO:0086047 IMP
    cellular response to calcium ion GO:0071277 IDA
    axon guidance GO:0007411 TAS
    regulation of ventricular cardiac muscle cell membrane depolarization GO:0060373 IMP
    membrane depolarization during SA node cell action potential GO:0086046 ISS
    membrane depolarization GO:0051899 IDA
    regulation of sodium ion transmembrane transport GO:1902305 IDA
    membrane depolarization during cardiac muscle cell action potential GO:0086012 IMP
    SA node cell action potential GO:0086015 IMP
    telencephalon development GO:0021537 ISS
    odontogenesis of dentin-containing tooth GO:0042475 ISS
    AV node cell action potential GO:0086016 IMP
    positive regulation of action potential GO:0045760 ISS
    sodium ion transport GO:0006814 IDA
    cardiac muscle cell action potential involved in contraction GO:0086002 IMP
    membrane depolarization during bundle of His cell action potential GO:0086048 IMP
    regulation of ventricular cardiac muscle cell membrane repolarization GO:0060307 IMP
    response to denervation involved in regulation of muscle adaptation GO:0014894 ISS
    membrane depolarization during AV node cell action potential GO:0086045 IMP
    bundle of His cell action potential GO:0086043 IMP
    regulation of heart rate GO:0002027 IMP
    regulation of heart rate by cardiac conduction GO:0086091 IMP
Subcellular Localization
    endoplasmic reticulum GO:0005783 IDA
    sarcolemma GO:0042383 IDA
    integral component of membrane GO:0016021 IDA
    T-tubule GO:0030315 IDA
    voltage-gated sodium channel complex GO:0001518 IDA
    lateral plasma membrane GO:0016328 TAS
    cell surface GO:0009986 IDA
    intercalated disc GO:0014704 ISS
    caveola GO:0005901 TAS
    plasma membrane GO:0005886 IDA
 Experiment description of studies that identified SCN5A in exosomes
1
Experiment ID 234
MISEV standards
EM
EV Biophysical techniques
TSG101|Alix|HSC70|GAPDH
EV Enriched markers
HSP90B1
EV Negative markers
qNano
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-C3
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
 Protein-protein interactions for SCN5A
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 SNTB1 6641
Invitro Homo sapiens
2 SNTA1 6640
Invivo Homo sapiens
3 SNTB2 6645
Invivo Homo sapiens
View the network image/svg+xml
 Pathways in which SCN5A is involved
PathwayEvidenceSource
Interaction between L1 and Ankyrins TAS Reactome





Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here