Gene ontology annotations for CHD6
Experiment description of studies that identified CHD6 in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
224
MISEV standards
✔
EM|AFM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81
Enriched markers
✔
GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25944692
Organism
Homo sapiens
Experiment description
Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes
Authors
"Keerthikumar S, Gangoda L, Liem M, Fonseka P, Atukorala I, Ozcitti C, Mechler A, Adda CG, Ang CS, Mathivanan S"
Journal name
Oncotarget
Publication year
2015
Sample
Neuroblastoma cells
Sample name
SH-SY5Y
Isolation/purification methods
Differential centrifugation Ultracentrifugation OptiPrep density gradient
Flotation density
1.10 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry Western blotting
Protein-protein interactions for CHD6
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
CDCA5
Affinity Capture-MS
Homo sapiens
2
TLX2
Proximity Label-MS
Homo sapiens
3
GUSBP5
Affinity Capture-MS
Homo sapiens
4
PAX6
Proximity Label-MS
Homo sapiens
5
ASF1A
25842
Proximity Label-MS
Homo sapiens
6
PARP1
142
Proximity Label-MS
Homo sapiens
7
PSMD14
10213
Affinity Capture-MS
Homo sapiens
8
COIL
Proximity Label-MS
Homo sapiens
9
FEV
Proximity Label-MS
Homo sapiens
10
SOX5
6660
Proximity Label-MS
Homo sapiens
11
NR3C1
2908
Proximity Label-MS
Homo sapiens
12
RACGAP1
29127
Affinity Capture-MS
Homo sapiens
13
ATXN1L
Two-hybrid
Homo sapiens
14
TOLLIP
54472
Two-hybrid
Homo sapiens
15
GATA2
Proximity Label-MS
Homo sapiens
16
KLF3
Proximity Label-MS
Homo sapiens
17
HIST1H4A
8359
Affinity Capture-MS
Homo sapiens
18
TLX3
Proximity Label-MS
Homo sapiens
19
EGFR
1956
Affinity Capture-MS
Homo sapiens
20
PAPD5
64282
Affinity Capture-MS
Homo sapiens
21
HIST3H3
8290
Protein-peptide
Homo sapiens
22
ELK3
Proximity Label-MS
Homo sapiens
23
CENPA
Proximity Label-MS
Homo sapiens
24
ESR1
Affinity Capture-MS
Homo sapiens
25
PAX7
Proximity Label-MS
Homo sapiens
26
AIRE
Affinity Capture-MS
Homo sapiens
27
SEC16A
9919
Affinity Capture-MS
Homo sapiens
28
ZCCHC10
Affinity Capture-MS
Homo sapiens
29
CHD3
1107
Co-fractionation
Homo sapiens
30
RPS6
6194
Cross-Linking-MS (XL-MS)
Homo sapiens
31
ZFYVE9
Two-hybrid
Homo sapiens
32
ZFYVE1
53349
Affinity Capture-MS
Homo sapiens
33
POLR1E
Proximity Label-MS
Homo sapiens
34
ARAF
369
Two-hybrid
Homo sapiens
35
KLF12
Proximity Label-MS
Homo sapiens
36
MECP2
4204
Affinity Capture-MS
Homo sapiens
37
VSX1
Proximity Label-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which CHD6 is involved
No pathways found